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tprg1.S tumor protein p63 regulated 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494786, updated on 4-Nov-2024

Summary

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Official Symbol
tprg1.S
Official Full Name
tumor protein p63 regulated 1 S homeolog
Primary source
Xenbase:XB-GENE-17333139
Locus tag
XELAEV_18029605mg
See related
EnsemblRapid:ENSXLAG00005025283 AllianceGenome:Xenbase:XB-GENE-17333139
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to be located in cytoplasm. Orthologous to human TPRG1 (tumor protein p63 regulated 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tprg1.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (89456723..89509486, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (84678907..84732150, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 2 S homeolog Neighboring gene tumor protein p63 S homeolog Neighboring gene LIM domain containing preferred translocation partner in lipoma S homeolog Neighboring gene BCL6, transcription repressor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC494786

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094620.1 → NP_001088089.1  uncharacterized protein LOC494786

    See identical proteins and their annotated locations for NP_001088089.1

    Status: PREDICTED

    Source sequence(s)
    BC082905
    UniProtKB/TrEMBL
    A0A974CSD8, Q63ZK7
    Related
    ENSXLAP00005075099.1, ENSXLAT00005076679.1
    Conserved Domains (1) summary
    pfam12456
    Location:59 → 160
    hSac2; Inositol phosphatase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    89456723..89509486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials