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rdh7.2.L retinol dehydrogenase 7, gene 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494781, updated on 4-Nov-2024

Summary

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Official Symbol
rdh7.2.L
Official Full Name
retinol dehydrogenase 7, gene 2 L homeolog
Primary source
Xenbase:XB-GENE-1007890
Locus tag
XELAEV_18013405mg
See related
EnsemblRapid:ENSXLAG00005006655 AllianceGenome:Xenbase:XB-GENE-1007890
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rdh7.2
Summary
Predicted to enable all-trans-retinol dehydrogenase (NAD+) activity. Predicted to act upstream of or within retinol metabolic process and steroid metabolic process. Predicted to be located in intracellular membrane-bounded organelle. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rdh7.2.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (145911131..145920083, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (139974164..139991632, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene nascent polypeptide associated complex subunit alpha L homeolog Neighboring gene retinol dehydrogenase 16 gene 3 L homeolog Neighboring gene retinol dehydrogenase 16 gene 2 L homeolog Neighboring gene retinol dehydrogenase 16 gene 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables all-trans-retinol dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within retinol metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within steroid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
retinol dehydrogenase 7, gene 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094615.2 → NP_001088084.1  retinol dehydrogenase 7, gene 2 L homeolog precursor

    See identical proteins and their annotated locations for NP_001088084.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082896
    UniProtKB/TrEMBL
    A0A974HZ05, Q63ZL6
    Related
    ENSXLAP00005019723.1, ENSXLAT00005020082.1
    Conserved Domains (2) summary
    pfam00106
    Location:30 → 214
    adh_short; short chain dehydrogenase
    cl21454
    Location:30 → 305
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    145911131..145920083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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