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clint1.S clathrin interactor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494733, updated on 4-Nov-2024

Summary

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Official Symbol
clint1.S
Official Full Name
clathrin interactor 1 S homeolog
Primary source
Xenbase:XB-GENE-6255326
Locus tag
XELAEV_18019956mg
See related
EnsemblRapid:ENSXLAG00005021058 AllianceGenome:Xenbase:XB-GENE-6255326
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
enth; epn4; epnr; clint; clint1; epsinr; clint1b; clint1-a; clint1-b
Summary
Predicted to enable clathrin binding activity and phospholipid binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in endosome and plasma membrane. Predicted to be part of clathrin vesicle coat. Orthologous to human CLINT1 (clathrin interactor 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See clint1.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (10445921..10493936, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (10455027..10502950, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 19 S homeolog Neighboring gene LSM11, U7 small nuclear RNA associated S homeolog Neighboring gene uncharacterized LOC108712447 Neighboring gene EBF family member 4 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of clathrin vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
clathrin interactor 1 S homeolog
Names
clathrin interactor 1 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094571.1 → NP_001088040.1  clathrin interactor 1 S homeolog

    See identical proteins and their annotated locations for NP_001088040.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082816
    UniProtKB/TrEMBL
    A0A974D687, Q63ZU4
    Related
    ENSXLAP00005061819.1, ENSXLAT00005063271.1
    Conserved Domains (1) summary
    cd03571
    Location:23 → 146
    ENTH_epsin; ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    10445921..10493936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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