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rgr.S retinal G protein coupled receptor S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494721, updated on 4-Nov-2024

Summary

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Official Symbol
rgr.S
Official Full Name
retinal G protein coupled receptor S homeolog
Primary source
Xenbase:XB-GENE-17330181
Locus tag
XELAEV_18000596mg
See related
EnsemblRapid:ENSXLAG00005018594 AllianceGenome:Xenbase:XB-GENE-17330181
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable G protein-coupled photoreceptor activity. Predicted to act upstream of or within several processes, including cellular response to light stimulus; phototransduction; and visual perception. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 44. Orthologous to human RGR (retinal G protein coupled receptor). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rgr.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (43030908..43045862)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694810.1 (4162071..4176968, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat, Ig-like and transmembrane domains 2 S homeolog Neighboring gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 S homeolog Neighboring gene solute carrier family 18 (vesicular acetylcholine transporter), member 3 S homeolog Neighboring gene choline O-acetyltransferase S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables G protein-coupled photoreceptor activity IEA
Inferred from Electronic Annotation
more info
  
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables photoreceptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cellular response to light stimulus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phototransduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within visual perception IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC494721

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094560.1 → NP_001088029.1  uncharacterized protein LOC494721

    See identical proteins and their annotated locations for NP_001088029.1

    Status: PREDICTED

    Source sequence(s)
    BC082691
    UniProtKB/TrEMBL
    A0A7T0BRW8, Q640D8
    Related
    ENSXLAP00005054925.1, ENSXLAT00005056113.1
    Conserved Domains (1) summary
    pfam00001
    Location:34 → 265
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    43030908..43045862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials