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cldn19.L claudin 19 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494684, updated on 18-Sep-2024

Summary

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Official Symbol
cldn19.L
Official Full Name
claudin 19 L homeolog
Primary source
Xenbase:XB-GENE-17346338
Locus tag
XELAEV_18035690mg
See related
EnsemblRapid:ENSXLAG00005016172
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
claudin-19
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Genomic context

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See cldn19.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (98457394..98484068)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (88609877..88636986)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene lamina-associated polypeptide 2-like Neighboring gene prolyl 3-hydroxylase 1 L homeolog Neighboring gene claudin-16 Neighboring gene claudin-16-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC494684

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094526.1 → NP_001087995.1  uncharacterized protein LOC494684

    See identical proteins and their annotated locations for NP_001087995.1

    Status: PREDICTED

    Source sequence(s)
    BC082674
    UniProtKB/TrEMBL
    A0A974HCC4, Q640F4
    Related
    ENSXLAP00005047589.1, ENSXLAT00005048699.1
    Conserved Domains (1) summary
    cl21598
    Location:4 → 182
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    98457394..98484068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018224573.2 → XP_018080062.1  uncharacterized protein LOC494684 isoform X1

    UniProtKB/TrEMBL
    A0A1L8FMB1, A0A974HCD9
    Related
    ENSXLAP00005047598.1, ENSXLAT00005048710.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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