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wdr82.L WD repeat domain 82 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494657, updated on 4-Nov-2024

Summary

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Official Symbol
wdr82.L
Official Full Name
WD repeat domain 82 L homeolog
Primary source
Xenbase:XB-GENE-6255612
Locus tag
XELAEV_18023869mg
See related
EnsemblRapid:ENSXLAG00005028364 AllianceGenome:Xenbase:XB-GENE-6255612
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
swd2; wdr82; mst107; wdr82a; tmem113; wdr82-a; wdr82-b
Summary
Predicted to enable chromatin binding activity. Predicted to act upstream of or within RNA catabolic process and negative regulation of DNA-templated transcription. Predicted to be located in chromosome and nucleus. Predicted to be part of Set1C/COMPASS complex. Orthologous to human WDR82 (WD repeat domain 82). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See wdr82.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (127321476..127332766)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (122071610..122083010)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal heavy chain 1 L homeolog Neighboring gene glycerate kinase L homeolog Neighboring gene twinfilin actin binding protein 2 L homeolog Neighboring gene WAP four-disulfide core domain 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription termination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lncRNA catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within negative regulation of DNA-templated transcription, elongation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within negative regulation of lncRNA transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within nuclear RNA surveillance ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
WD repeat-containing protein 82-A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094503.1 → NP_001087972.1  WD repeat-containing protein 82-A

    See identical proteins and their annotated locations for NP_001087972.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082629
    UniProtKB/Swiss-Prot
    Q640J6
    UniProtKB/TrEMBL
    A0A974HPZ4
    Related
    ENSXLAP00005084446.1, ENSXLAT00005086095.1
    Conserved Domains (3) summary
    COG2319
    Location:10 → 303
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:15 → 300
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:24 → 61
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    127321476..127332766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q640J6.1 GenPept UniProtKB/Swiss-Prot:Q640J6

Gene LinkOut

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