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rpe.S ribulose-5-phosphate-3-epimerase S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494647, updated on 4-Nov-2024

Summary

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Official Symbol
rpe.S
Official Full Name
ribulose-5-phosphate-3-epimerase S homeolog
Primary source
Xenbase:XB-GENE-1012412
Locus tag
XELAEV_18047329mg
See related
EnsemblRapid:ENSXLAG00005025862 AllianceGenome:Xenbase:XB-GENE-1012412
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rpe; rpe2-1
Summary
Predicted to enable D-ribulose-phosphate 3-epimerase activity and metal ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt, non-oxidative branch. Predicted to be located in cytosol. Orthologous to human RPE (ribulose-5-phosphate-3-epimerase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rpe.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (76817380..76821927, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (70178925..70183472, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 3 S homeolog Neighboring gene debranching RNA lariats 1 S homeolog Neighboring gene vacuolar protein sorting-associated protein 8 homolog Neighboring gene chromosome 9 C3orf70 homolog S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables D-ribulose-phosphate 3-epimerase activity IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribulose-5-phosphate-3-epimerase S homeolog
NP_001087964.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094495.1 → NP_001087964.1  ribulose-5-phosphate-3-epimerase S homeolog

    See identical proteins and their annotated locations for NP_001087964.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082474
    UniProtKB/TrEMBL
    A0A974BUM3, Q640W5
    Related
    ENSXLAP00005076861.1, ENSXLAT00005078452.1
    Conserved Domains (1) summary
    cd00429
    Location:6 → 214
    RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    76817380..76821927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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