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rab11b.L RAB11B, member RAS oncogene family gene 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494642, updated on 4-Nov-2024

Summary

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Official Symbol
rab11b.L
Official Full Name
RAB11B, member RAS oncogene family gene 1 L homeolog
Primary source
Xenbase:XB-GENE-17332887
Locus tag
XELAEV_18006293mg
See related
EnsemblRapid:ENSXLAG00005015861 AllianceGenome:Xenbase:XB-GENE-17332887
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rab11b.1; rab11b.1.L
Summary
Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within constitutive secretory pathway and regulated exocytosis. Predicted to be located in Golgi apparatus and recycling endosome. Orthologous to human RAB11B (RAB11B, member RAS oncogene family). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rab11b.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (110543937..110555868)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (98504103..98516043)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene KN motif and ankyrin repeat domains 3 L homeolog Neighboring gene angiopoietin like 4 L homeolog Neighboring gene E3 ubiquitin-protein ligase MARCHF2 Neighboring gene RAB11B, member RAS oncogene family, gene 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within constitutive secretory pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulated exocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ras-related protein Rab-11B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094490.1 → NP_001087959.1  Ras-related protein Rab-11B-like

    See identical proteins and their annotated locations for NP_001087959.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082421
    UniProtKB/TrEMBL
    A0A974I0Y5, Q641B7
    Related
    ENSXLAP00005046690.1, ENSXLAT00005047794.1
    Conserved Domains (1) summary
    cd01868
    Location:9 → 173
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    110543937..110555868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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