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snx3.L sorting nexin 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 494587, updated on 17-Aug-2024

Summary

Official Symbol
snx3.L
Official Full Name
sorting nexin 3 L homeolog
Primary source
Xenbase:XB-GENE-973414
Locus tag
XELAEV_18027206mg
See related
EnsemblRapid:ENSXLAG00005035960
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sdp3; snx3; Grd19; snx3a
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Genomic context

Location:
chromosome: 5L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (81967017..81991525)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (79746390..79770905)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene forkhead box O3 L homeolog Neighboring gene AFG1 like ATPase L homeolog Neighboring gene nuclear receptor subfamily 2 group E member 1 L homeolog Neighboring gene osteopetrosis associated transmembrane protein 1 L homeolog

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 
enables phosphatidylinositol phosphate binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094475.1NP_001087944.1  sorting nexin 3 L homeolog

    See identical proteins and their annotated locations for NP_001087944.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077549
    UniProtKB/TrEMBL
    A0A974CXQ9, Q6DDK9
    Related
    ENSXLAP00005107520.1, ENSXLAT00005109648.1
    Conserved Domains (1) summary
    cd07293
    Location:28150
    PX_SNX3; The phosphoinositide binding Phox Homology domain of Sorting Nexin 3

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    81967017..81991525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)