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TBCAP2 tubulin folding cofactor A pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 494541, updated on 17-Sep-2024

Summary

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Official Symbol
TBCAP2provided by HGNC
Official Full Name
tubulin folding cofactor A pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:42631
See related
AllianceGenome:HGNC:42631
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See TBCAP2 in Genome Data Viewer
Location:
1p36.21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (14691937..14692400, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (14135985..14136448, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (15018433..15018896, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene kazrin, periplakin interacting protein Neighboring gene MPRA-validated peak78 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:14696541-14697219 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:14699385-14700250 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:14730198-14731026 Neighboring gene KAZN antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:14763664-14763765 Neighboring gene uncharacterized LOC124903850 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:14843423-14844622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 226 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:14898509-14899073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:14955532-14956032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:14956033-14956533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:14964395-14964896 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 227 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:15004649-15004813 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15044353-15044920 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15052062-15052748 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15058239-15058960 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:15058961-15059682 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15059683-15060406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15061129-15061850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15061851-15062572 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:15068552-15069136 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:15069137-15069720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15088664-15089164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:15089165-15089665 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15105533-15106063 Neighboring gene uncharacterized LOC105376759 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:15148588-15149787 Neighboring gene uncharacterized LOC124903848 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:15152512-15153052

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tubulin-specific chaperone a pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004791.4 

    Range
    101..564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    14691937..14692400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    14135985..14136448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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