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PFJ30894_RS05005 CarD family transcriptional regulator [ Phascolarctobacterium faecium ]

Gene ID: 49406689, updated on 1-Aug-2024

Summary

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Gene symbol
PFJ30894_RS05005
Gene description
CarD family transcriptional regulator
Locus tag
PFJ30894_RS05005
Gene type
protein coding
Organism
Phascolarctobacterium faecium (strain: JCM 30894)
Lineage
Bacteria; Bacillota; Negativicutes; Acidaminococcales; Acidaminococcaceae; Phascolarctobacterium
Old locus tag
PFJ30894_01026
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Genomic context

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NZ_AP019004.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent Clp protease ATP-binding subunit Neighboring gene DNA repair protein RadA Neighboring gene PIN domain-containing protein Neighboring gene 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Neighboring gene 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_AP019004.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CdnL, a member of the large CarD-like family of bacterial proteins, is vital for Myxococcus xanthus and differs functionally from the global transcriptional regulator CarD. García-Moreno D, et al. Nucleic Acids Res, 2010 Aug. PMID 20371514, Free PMC Article
  2. Recruitment of a novel zinc-bound transcriptional factor by a bacterial HMGA-type protein is required for regulating multiple processes in Myxococcus xanthus. Peñalver-Mellado M, et al. Mol Microbiol, 2006 Aug. PMID 16879646
  3. Domain architecture of a high mobility group A-type bacterial transcriptional factor. Padmanabhan S, et al. J Biol Chem, 2001 Nov 9. PMID 11533063
  4. High mobility group I(Y)-like DNA-binding domains on a bacterial transcription factor. Nicolas FJ, et al. Proc Natl Acad Sci U S A, 1996 Jul 9. PMID 8692912, Free PMC Article
  5. Structure and function of transcription-repair coupling factor. I. Structural domains and binding properties. Selby CP, et al. J Biol Chem, 1995 Mar 3. PMID 7876261

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
CarD family transcriptional regulator

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_AP019004.1 Reference assembly

    Range
    1043666..1044145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_021717360.1 MULTISPECIES: CarD family transcriptional regulator [Phascolarctobacterium]

    See identical proteins and their annotated locations for WP_021717360.1

    UniProtKB/TrEMBL
    A0A3G9GRA4, A0AAJ4PK52, R6IFI1
    Conserved Domains (1) summary
    cl00588
    Location:1 → 155
    CarD_CdnL_TRCF; CarD-like/TRCF domain
Nucleotide Protein
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