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cdca4 cell division cycle associated 4 [ Danio rerio (zebrafish) ]

Gene ID: 494037, updated on 14-Nov-2024

Summary

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Official Symbol
cdca4provided by ZNC
Official Full Name
cell division cycle associated 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1695
See related
Ensembl:ENSDARG00000042319 AllianceGenome:ZFIN:ZDB-GENE-030131-1695
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb78b08; zgc:92217; wu:fb78b08; si:dkey-177p2.7
Summary
Predicted to enable transcription coactivator activity. Predicted to act upstream of or within cell division. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDCA4 (cell division cycle associated 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See cdca4 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (26939824..26946248)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (27040588..27047158)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 79 Neighboring gene uncharacterized LOC100150342 Neighboring gene si:dkey-177p2.6 Neighboring gene AHA1, activator of heat shock protein ATPase homolog 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. Ferg M, et al. EMBO J, 2007 Sep 5. PMID 17703193, Free PMC Article
  2. Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Wagner DE, et al. Science, 2018 Jun 1. PMID 29700229, Free PMC Article
  3. Positive correlation between gene coexpression and positional clustering in the zebrafish genome. Ng YK, et al. BMC Genomics, 2009 Jan 22. PMID 19159490, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cell division cycle-associated protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008580.1 → NP_001008580.1  cell division cycle-associated protein 4

    See identical proteins and their annotated locations for NP_001008580.1

    Status: PROVISIONAL

    Source sequence(s)
    BC086964
    UniProtKB/TrEMBL
    F6NH38, U3JAP1
    Related
    ENSDARP00000127309.1, ENSDART00000152992.2
    Conserved Domains (1) summary
    pfam06031
    Location:38 → 73
    SERTA; SERTA motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    26939824..26946248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009300568.4 → XP_009298843.1  cell division cycle-associated protein 4 isoform X2

    See identical proteins and their annotated locations for XP_009298843.1

    UniProtKB/TrEMBL
    F6NH38, U3JAP1
    Conserved Domains (1) summary
    pfam06031
    Location:38 → 73
    SERTA; SERTA motif

  2. XM_068215425.1 → XP_068071526.1  cell division cycle-associated protein 4 isoform X1

  3. XM_068215428.1 → XP_068071529.1  cell division cycle-associated protein 4 isoform X2

  4. XM_068215426.1 → XP_068071527.1  cell division cycle-associated protein 4 isoform X1

  5. XM_005160568.5 → XP_005160625.1  cell division cycle-associated protein 4 isoform X2

    See identical proteins and their annotated locations for XP_005160625.1

    UniProtKB/TrEMBL
    F6NH38, U3JAP1
    Related
    ENSDARP00000123471.1, ENSDART00000138369.3
    Conserved Domains (1) summary
    pfam06031
    Location:38 → 73
    SERTA; SERTA motif

  6. XM_005160570.5 → XP_005160627.1  cell division cycle-associated protein 4 isoform X2

    See identical proteins and their annotated locations for XP_005160627.1

    UniProtKB/TrEMBL
    F6NH38, U3JAP1
    Conserved Domains (1) summary
    pfam06031
    Location:38 → 73
    SERTA; SERTA motif

  7. XM_005160569.5 → XP_005160626.1  cell division cycle-associated protein 4 isoform X2

    See identical proteins and their annotated locations for XP_005160626.1

    UniProtKB/TrEMBL
    F6NH38, U3JAP1
    Related
    ENSDARP00000062060.4, ENSDART00000062061.5
    Conserved Domains (1) summary
    pfam06031
    Location:38 → 73
    SERTA; SERTA motif

  8. XM_068215427.1 → XP_068071528.1  cell division cycle-associated protein 4 isoform X2

  9. XM_005160563.5 → XP_005160620.1  cell division cycle-associated protein 4 isoform X1

    See identical proteins and their annotated locations for XP_005160620.1

    UniProtKB/TrEMBL
    A0A8M2B7E4
    Conserved Domains (1) summary
    pfam06031
    Location:64 → 100
    SERTA; SERTA motif

  10. XM_005160564.5 → XP_005160621.1  cell division cycle-associated protein 4 isoform X1

    See identical proteins and their annotated locations for XP_005160621.1

    UniProtKB/TrEMBL
    A0A8M2B7E4
    Conserved Domains (1) summary
    pfam06031
    Location:64 → 100
    SERTA; SERTA motif
Nucleotide Protein
Heading Accession and Version

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