extl3 exostosin like glycosyltransferase 3 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: extl3provided by Xenbase
Official Full Name: exostosin like glycosyltransferase 3provided by Xenbase
Primary source: Xenbase:XB-GENE-855819
See related: Ensembl:ENSXETG00000000117 AllianceGenome:Xenbase:XB-GENE-855819
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: reg; rpr; botv; regr; extr1
Summary: Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within heparan sulfate proteoglycan biosynthetic process and protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human EXTL3 (exostosin like glycosyltransferase 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	5	NC_030681.2 (151932985..151990935, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	Unplaced Scaffold	NW_016683402.1 (238406..294288, complement)

Chromosome 5 - NC_030681.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within heparan sulfate proteoglycan biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein glycosylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: exostosin-like 3

Names: exostoses (multiple)-like 3

NP_001008036.1

EC 2.4.1.223

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001008035.1 → NP_001008036.1 exostosin-like 3

See identical proteins and their annotated locations for NP_001008036.1

Status: PROVISIONAL

Source sequence(s)

BC080918

UniProtKB/TrEMBL

A0A1B8Y7U2, F6XD50, Q66JH0

Related

ENSXETP00000000223.3, ENSXETT00000000223.4

Conserved Domains (3) summary

pfam03016
Location:190 → 500

Exostosin; Exostosin family

pfam07926
Location:71 → 150

TPR_MLP1_2; TPR/MLP1/MLP2-like protein

pfam09258
Location:663 → 900

Glyco_transf_64; Glycosyl transferase family 64 domain