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TAF4B TATA-box binding protein associated factor 4b [ Canis lupus familiaris (dog) ]

Gene ID: 490507, updated on 17-Aug-2024

Summary

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Official Symbol
TAF4Bprovided by VGNC
Official Full Name
TATA-box binding protein associated factor 4bprovided by VGNC
Primary source
VGNC:VGNC:47082
See related
Ensembl:ENSCAFG00845012684
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TAF4B in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (62326267..62452063, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (61710878..61836411, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (62314451..62440300, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (61998731..62124071, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (62011647..62137195, complement)

Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene aquaporin 4 Neighboring gene uncharacterized LOC111096790 Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene homeobox protein CDX-4-like Neighboring gene uncharacterized LOC111096791 Neighboring gene proteasome 20S subunit alpha 8 Neighboring gene SS18 subunit of BAF chromatin remodeling complex

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 4B; LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051811.1 Reference ROS_Cfam_1.0

    Range
    62326267..62452063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038672427.1 → XP_038528355.1  transcription initiation factor TFIID subunit 4B

    UniProtKB/TrEMBL
    A0A8C0KNH4, A0A8C0PL83, A0A8I3NDP1
    Related
    ENSCAFP00845017799.1, ENSCAFT00845022694.1
    Conserved Domains (3) summary
    PHA03247
    Location:2 → 246
    PHA03247; large tegument protein UL36; Provisional
    pfam05236
    Location:614 → 857
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:258 → 348
    TAFH; NHR1 homology to TAF

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049267.1 Alternate UMICH_Zoey_3.1

    Range
    61998731..62124071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038482193.1 → XP_038338121.1  LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 4B

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

    Range
    62011647..62137195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038607742.1 → XP_038463670.1  transcription initiation factor TFIID subunit 4B

    Conserved Domains (3) summary
    PHA03247
    Location:2 → 246
    PHA03247; large tegument protein UL36; Provisional
    pfam05236
    Location:614 → 857
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:258 → 348
    TAFH; NHR1 homology to TAF

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

    Range
    62314451..62440300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038543622.1 → XP_038399550.1  transcription initiation factor TFIID subunit 4B

    UniProtKB/TrEMBL
    A0A8C0KNH4, A0A8C0PL83, A0A8I3NDP1
    Conserved Domains (3) summary
    PHA03247
    Location:2 → 246
    PHA03247; large tegument protein UL36; Provisional
    pfam05236
    Location:614 → 857
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:258 → 348
    TAFH; NHR1 homology to TAF

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    61710878..61836411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_547629.6 → XP_547629.4  transcription initiation factor TFIID subunit 4B

    UniProtKB/TrEMBL
    A0A8C0KNH4, A0A8C0PL83, A0A8I3NDP1
    Conserved Domains (3) summary
    PHA03247
    Location:2 → 246
    PHA03247; large tegument protein UL36; Provisional
    pfam05236
    Location:614 → 857
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:258 → 348
    TAFH; NHR1 homology to TAF
Nucleotide Protein
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