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GFI1 growth factor independent 1 transcriptional repressor [ Canis lupus familiaris (dog) ]

Gene ID: 490156, updated on 17-Aug-2024

Summary

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Official Symbol
GFI1provided by VGNC
Official Full Name
growth factor independent 1 transcriptional repressorprovided by VGNC
Primary source
VGNC:VGNC:41181
See related
Ensembl:ENSCAFG00845015425
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See GFI1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (56849754..56861112)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (59174527..59183663)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (56970884..56980018)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (56531815..56540949)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (56510728..56519864)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD21 Neighboring gene ribosomal protein L5 Neighboring gene ecotropic viral integration site 5 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC102154170 Neighboring gene protein C1orf194-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Gfi-1
Names
growth factor independence 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012719.1 → NP_001012737.1  zinc finger protein Gfi-1

    See identical proteins and their annotated locations for NP_001012737.1

    Status: PROVISIONAL

    Source sequence(s)
    AB178767
    UniProtKB/Swiss-Prot
    Q5DWN0
    Related
    ENSCAFP00845021646.1, ENSCAFT00845027512.1
    Conserved Domains (2) summary
    COG5048
    Location:254 → 416
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:314 → 334
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    56849754..56861112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667617.1 → XP_038523545.1  zinc finger protein Gfi-1 isoform X1

    UniProtKB/Swiss-Prot
    Q5DWN0
    Conserved Domains (2) summary
    COG5048
    Location:254 → 416
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:314 → 334
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_038667618.1 → XP_038523546.1  zinc finger protein Gfi-1 isoform X1

    UniProtKB/Swiss-Prot
    Q5DWN0
    Conserved Domains (2) summary
    COG5048
    Location:254 → 416
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:314 → 334
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    56531815..56540949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    56510728..56519864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    56970884..56980018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    59174527..59183663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5DWN0.1 GenPept UniProtKB/Swiss-Prot:Q5DWN0

Gene LinkOut

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