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CLMP CXADR like membrane protein [ Canis lupus familiaris (dog) ]

Gene ID: 489353, updated on 17-Aug-2024

Summary

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Official Symbol
CLMPprovided by VGNC
Official Full Name
CXADR like membrane proteinprovided by VGNC
Primary source
VGNC:VGNC:111412
See related
Ensembl:ENSCAFG00845012839
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CLMP in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (11141243..11240485)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (11246302..11345522)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (11221449..11320980)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (11244300..11343931)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (11175179..11276711)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene GRAM domain containing 1B Neighboring gene uncharacterized LOC106558763 Neighboring gene uncharacterized LOC106558786 Neighboring gene small nucleolar RNA SNORD14 Neighboring gene heat shock protein family A (Hsp70) member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: CXADR-like membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    11141243..11240485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038664591.1 → XP_038520519.1  LOW QUALITY PROTEIN: CXADR-like membrane protein

    UniProtKB/TrEMBL
    A0A8C0KDP4, A0A8C0LY37, A0A8I3NJV6
    Related
    ENSCAFP00845017892.1, ENSCAFT00845022826.1
    Conserved Domains (2) summary
    smart00409
    Location:146 → 227
    IG; Immunoglobulin
    cd20960
    Location:15 → 129
    IgV_CAR_like; Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    11244300..11343931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038474718.1 → XP_038330646.1  LOW QUALITY PROTEIN: CXADR-like membrane protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    11175179..11276711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038600050.1 → XP_038455978.1  LOW QUALITY PROTEIN: CXADR-like membrane protein

    Conserved Domains (2) summary
    smart00409
    Location:146 → 227
    IG; Immunoglobulin
    cd20960
    Location:15 → 129
    IgV_CAR_like; Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    11221449..11320980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038535850.1 → XP_038391778.1  LOW QUALITY PROTEIN: CXADR-like membrane protein

    UniProtKB/TrEMBL
    A0A8C0KDP4, A0A8C0LY37, A0A8I3NJV6
    Conserved Domains (2) summary
    smart00409
    Location:146 → 227
    IG; Immunoglobulin
    cd20960
    Location:15 → 129
    IgV_CAR_like; Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    11246302..11345522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507673.1 → XP_038363601.1  LOW QUALITY PROTEIN: CXADR-like membrane protein

    UniProtKB/TrEMBL
    A0A8C0KDP4, A0A8C0LY37, A0A8I3NJV6
    Conserved Domains (2) summary
    smart00409
    Location:146 → 227
    IG; Immunoglobulin
    cd20960
    Location:15 → 129
    IgV_CAR_like; Immunoglobulin Variable (V) domain of the Coxsackievirus and Adenovirus Receptor (CAR), and similar proteins
Nucleotide Protein
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