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GCNT4 glucosaminyl (N-acetyl) transferase 4 [ Canis lupus familiaris (dog) ]

Gene ID: 488946, updated on 5-Mar-2024

Summary

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Gene symbol
GCNT4
Gene description
glucosaminyl (N-acetyl) transferase 4
See related
Ensembl:ENSCAFG00845012365
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See GCNT4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (31129485..31153307)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (32432498..32441223)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (31408140..31431040)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (31059370..31083226)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (31030795..31054614)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ankyrin repeat domain 31 Neighboring gene metallothionein-2E-like Neighboring gene microRNA mir-8901 Neighboring gene olfactory receptor family 6 subfamily C member 63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4
Names
glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
XP_022272506.2
XP_038327547.1
XP_038327548.1
XP_038327549.1
XP_038327550.1
XP_038328435.1
XP_038388478.1
XP_038388479.1
XP_038388480.1
XP_038388481.1
XP_038452764.1
XP_038452765.1
XP_038452766.1
XP_038516975.1
XP_038516976.1
XP_038516977.1
XP_038516978.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    31129485..31153307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038661048.1 → XP_038516976.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  2. XM_038661047.1 → XP_038516975.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  3. XM_038661050.1 → XP_038516978.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Related
    ENSCAFP00845017269.1, ENSCAFT00845021966.1
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  4. XM_038661049.1 → XP_038516977.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    31059370..31083226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471620.1 → XP_038327548.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  2. XM_038471619.1 → XP_038327547.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  3. XM_038471622.1 → XP_038327550.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  4. XM_038471621.1 → XP_038327549.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    31030795..31054614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038596836.1 → XP_038452764.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  2. XM_038596838.1 → XP_038452766.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  3. XM_038596837.1 → XP_038452765.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    31408140..31431040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532551.1 → XP_038388479.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  2. XM_038532550.1 → XP_038388478.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  3. XM_038532553.1 → XP_038388481.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  4. XM_038532552.1 → XP_038388480.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32432498..32441223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038472507.1 → XP_038328435.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme

  2. XM_022416798.2 → XP_022272506.2  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C0LQB9, A0A8C0QCD8, A0A8I3NP24
    Conserved Domains (1) summary
    cl27418
    Location:134 → 403
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
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