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CHD1 chromodomain helicase DNA binding protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 488891, updated on 17-Aug-2024

Summary

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Official Symbol
CHD1provided by VGNC
Official Full Name
chromodomain helicase DNA binding protein 1provided by VGNC
Primary source
VGNC:VGNC:39199
See related
Ensembl:ENSCAFG00845002210
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CHD1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
37
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (11176524..11250420)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (12628640..12702491)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (11334612..11408529)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (11126127..11200027)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (11133031..11206864)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119871165 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119871074 Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene uncharacterized LOC111095122

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1
XP_038324986.1
XP_038324992.1
XP_038327233.1
XP_038327234.1
XP_038388177.1
XP_038388178.1
XP_038452427.1
XP_038452428.1
XP_038516666.1
XP_038516667.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    11176524..11250420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038660738.1 → XP_038516666.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P182
    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1688 → 1797
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_038660739.1 → XP_038516667.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0P182, A0A8I3MKL6
    Related
    ENSCAFP00845003106.1, ENSCAFT00845003896.1
    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1600 → 1709
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1408 → 1498
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    11126127..11200027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471305.1 → XP_038327233.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1688 → 1797
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_038471306.1 → XP_038327234.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1600 → 1709
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1408 → 1498
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    11133031..11206864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038596499.1 → XP_038452427.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1688 → 1797
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_038596500.1 → XP_038452428.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1600 → 1709
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1408 → 1498
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    11334612..11408529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532249.1 → XP_038388177.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P182
    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1688 → 1797
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1496 → 1586
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_038532250.1 → XP_038388178.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0P182, A0A8I3MKL6
    Conserved Domains (7) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1600 → 1709
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1408 → 1498
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1122 → 1208
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    12628640..12702491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038469058.1 → XP_038324986.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P182
    Conserved Domains (7) summary
    PLN03142
    Location:463 → 999
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1689 → 1798
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:386 → 442
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:275 → 353
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1497 → 1587
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1123 → 1209
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:459 → 696
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_038469064.1 → XP_038324992.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NL07, A0A8C0P182, A0A8P0NA87
    Conserved Domains (7) summary
    PLN03142
    Location:463 → 999
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1601 → 1710
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:386 → 442
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:275 → 353
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    pfam13907
    Location:1409 → 1499
    DUF4208; Domain of unknown function (DUF4208)
    pfam18375
    Location:1123 → 1209
    CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    cl28899
    Location:459 → 696
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
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