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GPATCH2 G-patch domain containing 2 [ Canis lupus familiaris (dog) ]

Gene ID: 488594, updated on 17-Aug-2024

Summary

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Official Symbol
GPATCH2provided by VGNC
Official Full Name
G-patch domain containing 2provided by VGNC
Primary source
VGNC:VGNC:41365
See related
Ensembl:ENSCAFG00845027758
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See GPATCH2 in Genome Data Viewer
Location:
chromosome: 38
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 38 NC_051842.1 (12715544..12883411, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 38 NC_006620.4 (12725387..12893272, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 38 NC_049259.1 (13381421..13549482, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 38 NC_049298.1 (12726062..12893706, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 38 NC_049779.1 (13072275..13240324, complement)

Chromosome 38 - NC_051842.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111094540 Neighboring gene uncharacterized LOC111094541 Neighboring gene high mobility group protein B1-like Neighboring gene uncharacterized LOC102155743 Neighboring gene spermatogenesis associated 17 Neighboring gene uncharacterized LOC111094593

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G patch domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051842.1 Reference ROS_Cfam_1.0

    Range
    12715544..12883411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038448443.1 → XP_038304371.1  G patch domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PJ19

  2. XM_038448442.1 → XP_038304370.1  G patch domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PC90, A0A8C0PDC8, A0A8I3Q3P8, A0A8I3SAZ8
    Related
    ENSCAFP00845038408.1, ENSCAFT00845048961.1
    Conserved Domains (1) summary
    pfam01585
    Location:468 → 509
    G-patch; G-patch domain

  3. XM_038448444.1 → XP_038304372.1  G patch domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SFN5, A0A8I3Q3K8
    Related
    ENSCAFP00845038482.1, ENSCAFT00845049043.1

  4. XM_038448445.1 → XP_038304373.1  G patch domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JSW8, A0A8C0SH16, A0A8C0SI52, A0A8I3PVE5, A0A8I3PZ13
    Related
    ENSCAFP00845038551.1, ENSCAFT00845049137.1

RNA

  1. XR_005308801.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049298.1 Alternate UMICH_Zoey_3.1

    Range
    12726062..12893706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038522351.1 → XP_038378279.1  G patch domain-containing protein 2 isoform X2

  2. XM_038522350.1 → XP_038378278.1  G patch domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    pfam01585
    Location:468 → 509
    G-patch; G-patch domain

  3. XM_038522352.1 → XP_038378280.1  G patch domain-containing protein 2 isoform X3

  4. XM_038522353.1 → XP_038378281.1  G patch domain-containing protein 2 isoform X4

RNA

  1. XR_005351704.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049779.1 Alternate UNSW_CanFamBas_1.0

    Range
    13072275..13240324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038650558.1 → XP_038506486.1  G patch domain-containing protein 2 isoform X2

  2. XM_038650557.1 → XP_038506485.1  G patch domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    pfam01585
    Location:468 → 509
    G-patch; G-patch domain

  3. XM_038650559.1 → XP_038506487.1  G patch domain-containing protein 2 isoform X3

  4. XM_038650560.1 → XP_038506488.1  G patch domain-containing protein 2 isoform X4

RNA

  1. XR_005419448.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049259.1 Alternate UU_Cfam_GSD_1.0

    Range
    13381421..13549482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038586155.1 → XP_038442083.1  G patch domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PJ19

  2. XM_038586154.1 → XP_038442082.1  G patch domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PC90, A0A8C0PDC8, A0A8I3Q3P8, A0A8I3SAZ8
    Conserved Domains (1) summary
    pfam01585
    Location:468 → 509
    G-patch; G-patch domain

  3. XM_038586156.1 → XP_038442084.1  G patch domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SFN5, A0A8I3Q3K8

  4. XM_038586157.1 → XP_038442085.1  G patch domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JSW8, A0A8C0SH16, A0A8C0SI52, A0A8I3PVE5, A0A8I3PZ13

RNA

  1. XR_005385700.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006620.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    12725387..12893272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022415376.2 → XP_022271084.1  G patch domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PJ19

  2. XM_545711.7 → XP_545711.2  G patch domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PC90, A0A8C0PDC8, A0A8I3Q3P8, A0A8I3SAZ8
    Conserved Domains (1) summary
    pfam01585
    Location:468 → 509
    G-patch; G-patch domain

  3. XM_022415377.2 → XP_022271085.1  G patch domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SFN5, A0A8I3Q3K8

  4. XM_014111245.3 → XP_013966720.1  G patch domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8C0JSW8, A0A8C0SH16, A0A8C0SI52, A0A8I3PVE5, A0A8I3PZ13

RNA

  1. XR_002623937.2 RNA Sequence

Nucleotide Protein
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