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H3C1 H3 clustered histone 1 [ Canis lupus familiaris (dog) ]

Gene ID: 488263, updated on 17-Aug-2024

Summary

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Official Symbol
H3C1provided by VGNC
Official Full Name
H3 clustered histone 1provided by VGNC
Primary source
VGNC:VGNC:83716
See related
Ensembl:ENSCAFG00845025410
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See H3C1 in Genome Data Viewer
Location:
chromosome: 35
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (24090638..24092585)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (23854090..23856054)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (25390611..25392575)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (23906964..23908927)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (23958025..23960132)

Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 38 Neighboring gene uncharacterized LOC119867682 Neighboring gene H1.2 linker histone, cluster member Neighboring gene H1.1 linker histone, cluster member Neighboring gene histone H4 Neighboring gene histone H3.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H3.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051839.1 Reference ROS_Cfam_1.0

    Range
    24090638..24092585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446543.1 → XP_038302471.1  histone H3.1

    UniProtKB/TrEMBL
    A0A8C0JLI8, A0A8C0TQX3, J9PB22
    Related
    ENSCAFP00845035137.1, ENSCAFT00845044837.1
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049295.1 Alternate UMICH_Zoey_3.1

    Range
    23906964..23908927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520674.1 → XP_038376602.1  histone H3.1

    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

    Range
    23958025..23960132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648780.1 → XP_038504708.1  histone H3.1

    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

    Range
    25390611..25392575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584343.1 → XP_038440271.1  histone H3.1

    UniProtKB/TrEMBL
    A0A8C0JLI8, A0A8C0TQX3, J9PB22
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    23854090..23856054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005640101.4 → XP_005640158.1  histone H3.1

    See identical proteins and their annotated locations for XP_005640158.1

    UniProtKB/TrEMBL
    A0A8C0JLI8, A0A8C0TQX3, J9PB22
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
Nucleotide Protein
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