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ATOH1 atonal bHLH transcription factor 1 [ Canis lupus familiaris (dog) ]

Gene ID: 487864, updated on 17-Aug-2024

Summary

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Official Symbol
ATOH1provided by VGNC
Official Full Name
atonal bHLH transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:38235
See related
Ensembl:ENSCAFG00845020445
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
ATH1
Orthologs
human mouse all
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Genomic context

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See ATOH1 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 32 NC_051836.1 (16985533..16987838)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 32 NC_006614.4 (25139203..25141513, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 32 NC_049253.1 (23118806..23121117, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 32 NC_049292.1 (16957560..16959866)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 32 NC_049773.1 (16773311..16775500)

Chromosome 32 - NC_051836.1Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor delta type subunit 2 Neighboring gene uncharacterized LOC119867187 Neighboring gene uncharacterized LOC111093647 Neighboring gene uncharacterized LOC106558121 Neighboring gene uncharacterized LOC106558143 Neighboring gene SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and analysis of basic helix-loop-helix domains in dog, Canis lupus familiaris. Wang XH, et al. Mol Genet Genomics, 2015 Apr. PMID 25403511
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein atonal homolog 1
Names
atonal homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051836.1 Reference ROS_Cfam_1.0

    Range
    16985533..16987838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443809.1 → XP_038299737.1  protein atonal homolog 1

    UniProtKB/TrEMBL
    A0A8C0JR89, A0A8C0RSS5, A0A8C0T811, A0A8I3P7P9
    Related
    ENSCAFP00845028176.1, ENSCAFT00845036002.1
    Conserved Domains (1) summary
    cd19713
    Location:157 → 220
    bHLH_TS_ATOH1; basic helix-loop-helix (bHLH) domain found in protein atonal homolog 1 (ATOH1) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049292.1 Alternate UMICH_Zoey_3.1

    Range
    16957560..16959866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038518941.1 → XP_038374869.1  protein atonal homolog 1

    Conserved Domains (1) summary
    cd19713
    Location:157 → 220
    bHLH_TS_ATOH1; basic helix-loop-helix (bHLH) domain found in protein atonal homolog 1 (ATOH1) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049773.1 Alternate UNSW_CanFamBas_1.0

    Range
    16773311..16775500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038646156.1 → XP_038502084.1  protein atonal homolog 1

    Conserved Domains (1) summary
    cd19713
    Location:157 → 220
    bHLH_TS_ATOH1; basic helix-loop-helix (bHLH) domain found in protein atonal homolog 1 (ATOH1) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049253.1 Alternate UU_Cfam_GSD_1.0

    Range
    23118806..23121117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038581740.1 → XP_038437668.1  protein atonal homolog 1

    UniProtKB/TrEMBL
    A0A8C0JR89, A0A8C0RSS5, A0A8C0T811, A0A8I3P7P9
    Conserved Domains (1) summary
    cd19713
    Location:157 → 220
    bHLH_TS_ATOH1; basic helix-loop-helix (bHLH) domain found in protein atonal homolog 1 (ATOH1) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006614.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25139203..25141513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_544986.5 → XP_544986.2  protein atonal homolog 1

    UniProtKB/TrEMBL
    A0A8C0JR89, A0A8C0RSS5, A0A8C0T811, A0A8I3P7P9
    Conserved Domains (1) summary
    cd19713
    Location:157 → 220
    bHLH_TS_ATOH1; basic helix-loop-helix (bHLH) domain found in protein atonal homolog 1 (ATOH1) and similar proteins
Nucleotide Protein
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