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RCN2 reticulocalbin 2 [ Canis lupus familiaris (dog) ]

Gene ID: 487666, updated on 17-Aug-2024

Summary

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Official Symbol
RCN2provided by VGNC
Official Full Name
reticulocalbin 2provided by VGNC
Primary source
VGNC:VGNC:54349
See related
Ensembl:ENSCAFG00845022713
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RCN2 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (39544448..39559744, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (39202331..39217625, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (39778402..39793607, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (39492429..39507723, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (39540997..39556294, complement)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene tetraspanin 3 Neighboring gene uncharacterized LOC119866818 Neighboring gene proline-serine-threonine phosphatase interacting protein 1 Neighboring gene uncharacterized LOC102152121 Neighboring gene S-phase cyclin A associated protein in the ER Neighboring gene ragulator complex protein LAMTOR3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulocalbin-2; LOW QUALITY PROTEIN: reticulocalbin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    39544448..39559744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443075.1 → XP_038299003.1  reticulocalbin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PKT1, A0A8P0NJK3
    Related
    ENSCAFP00845031400.1, ENSCAFT00845040099.1
    Conserved Domains (1) summary
    cd16224
    Location:29 → 295
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

  2. XM_038443074.1 → XP_038299002.1  reticulocalbin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JSE3, A0A8C0MKF8, A0A8P0NJK3, A0A8P0TEN6
    Conserved Domains (1) summary
    cd16224
    Location:29 → 296
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    39492429..39507723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517505.1 → XP_038373433.1  reticulocalbin-2 isoform X2

    Conserved Domains (1) summary
    cd16224
    Location:29 → 295
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

  2. XM_038517504.1 → XP_038373432.1  reticulocalbin-2 isoform X1

    Conserved Domains (1) summary
    cd16224
    Location:29 → 296
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    39540997..39556294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038645438.1 → XP_038501366.1  reticulocalbin-2 isoform X2

    Conserved Domains (1) summary
    cd16224
    Location:29 → 295
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

  2. XM_038645437.1 → XP_038501365.1  reticulocalbin-2 isoform X1

    Conserved Domains (1) summary
    cd16224
    Location:29 → 296
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    39778402..39793607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038581072.1 → XP_038437000.1  LOW QUALITY PROTEIN: reticulocalbin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JSE3, A0A8C0MKF8, A0A8P0NJK3, A0A8P0TEN6
    Conserved Domains (1) summary
    cd16224
    Location:29 → 296
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39202331..39217625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005638659.3 → XP_005638716.2  reticulocalbin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PKT1, A0A8P0NJK3
    Conserved Domains (1) summary
    cd16224
    Location:29 → 295
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)

  2. XM_544790.6 → XP_544790.3  reticulocalbin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JSE3, A0A8C0MKF8, A0A8P0NJK3, A0A8P0TEN6
    Conserved Domains (1) summary
    cd16224
    Location:29 → 296
    EFh_CREC_RCN2; EF-hand, calcium binding motif, found in reticulocalbin-2 (RCN2)
Nucleotide Protein
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