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CILP cartilage intermediate layer protein [ Canis lupus familiaris (dog) ]

Gene ID: 487603, updated on 17-Aug-2024

Summary

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Official Symbol
CILPprovided by VGNC
Official Full Name
cartilage intermediate layer proteinprovided by VGNC
Primary source
VGNC:VGNC:39274
See related
Ensembl:ENSCAFG00845025013
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CILP in Genome Data Viewer
Location:
chromosome: 30
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (29762499..29777163, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (29502954..29517542, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (29997363..30011982, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (29694647..29709274, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (29756731..29771069, complement)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111093306 Neighboring gene uncharacterized LOC119866918 Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit X Neighboring gene arginine vasopressin-induced protein 1 Neighboring gene poly(ADP-ribose) polymerase family member 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
cartilage intermediate layer protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    29762499..29777163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038442663.1 → XP_038298591.1  cartilage intermediate layer protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3S512, A0A8P0P6I8
    Related
    ENSCAFP00845034598.1, ENSCAFT00845044151.1
    Conserved Domains (5) summary
    smart00209
    Location:161 → 209
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:65 → 148
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:235 → 297
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:318 → 388
    Ig_3; Immunoglobulin domain
    cd00096
    Location:318 → 321
    Ig; Ig strand A [structural motif]

  2. XM_038442664.1 → XP_038298592.1  cartilage intermediate layer protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TV13
    Conserved Domains (5) summary
    smart00209
    Location:148 → 196
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:52 → 135
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:222 → 284
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:305 → 375
    Ig_3; Immunoglobulin domain
    cd00096
    Location:305 → 308
    Ig; Ig strand A [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    29694647..29709274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517109.1 → XP_038373037.1  cartilage intermediate layer protein 1 isoform X1

    Conserved Domains (5) summary
    smart00209
    Location:161 → 209
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:65 → 148
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:235 → 297
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:318 → 388
    Ig_3; Immunoglobulin domain
    cd00096
    Location:318 → 321
    Ig; Ig strand A [structural motif]

  2. XM_038517110.1 → XP_038373038.1  cartilage intermediate layer protein 1 isoform X2

    Conserved Domains (5) summary
    smart00209
    Location:148 → 196
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:52 → 135
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:222 → 284
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:305 → 375
    Ig_3; Immunoglobulin domain
    cd00096
    Location:305 → 308
    Ig; Ig strand A [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    29756731..29771069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038645047.1 → XP_038500975.1  cartilage intermediate layer protein 1 isoform X1

  2. XM_038645048.1 → XP_038500976.1  cartilage intermediate layer protein 1 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    29997363..30011982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038580724.1 → XP_038436652.1  cartilage intermediate layer protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3S512, A0A8P0P6I8
    Conserved Domains (5) summary
    smart00209
    Location:161 → 209
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:65 → 148
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:235 → 297
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:318 → 388
    Ig_3; Immunoglobulin domain
    cd00096
    Location:318 → 321
    Ig; Ig strand A [structural motif]

  2. XM_038580725.1 → XP_038436653.1  cartilage intermediate layer protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TV13
    Conserved Domains (5) summary
    smart00209
    Location:148 → 196
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:52 → 135
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:222 → 284
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:305 → 375
    Ig_3; Immunoglobulin domain
    cd00096
    Location:305 → 308
    Ig; Ig strand A [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    29502954..29517542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_544728.7 → XP_544728.5  cartilage intermediate layer protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3S512, A0A8P0P6I8
    Conserved Domains (5) summary
    smart00209
    Location:161 → 209
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:65 → 148
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:235 → 297
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:318 → 388
    Ig_3; Immunoglobulin domain
    cd00096
    Location:318 → 321
    Ig; Ig strand A [structural motif]

  2. XM_038461275.1 → XP_038317203.1  cartilage intermediate layer protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TV13
    Conserved Domains (5) summary
    smart00209
    Location:148 → 196
    TSP1; Thrombospondin type 1 repeats
    pfam13330
    Location:52 → 135
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:222 → 284
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13927
    Location:305 → 375
    Ig_3; Immunoglobulin domain
    cd00096
    Location:305 → 308
    Ig; Ig strand A [structural motif]
Nucleotide Protein
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