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VPS39 VPS39 subunit of HOPS complex [ Canis lupus familiaris (dog) ]

Gene ID: 487516, updated on 5-Mar-2024

Summary

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Official Symbol
VPS39provided by VGNC
Official Full Name
VPS39 subunit of HOPS complexprovided by VGNC
Primary source
VGNC:VGNC:48290
See related
Ensembl:ENSCAFG00845017829
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See VPS39 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
27
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (9301394..9348552, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (9224925..9271967, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (9461083..9508187, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (9221763..9268866, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (9326778..9373930, complement)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2 group IVD Neighboring gene uncharacterized LOC119866877 Neighboring gene phospholipase A2 group IVF Neighboring gene transmembrane protein 87A Neighboring gene U6 spliceosomal RNA Neighboring gene glucosidase alpha, neutral C Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vam6/Vps39-like protein
Names
VPS39, HOPS complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    9301394..9348552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038442066.1 → XP_038297994.1  vam6/Vps39-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0P521, A0A8C0SFZ7, A0A8I3NUC9, A0A8I3NYS1
    Related
    ENSCAFP00845024712.1, ENSCAFT00845031569.1
    Conserved Domains (3) summary
    pfam10366
    Location:460 → 562
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:772 → 880
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 291
    CNH; CNH domain

  2. XM_038442064.1 → XP_038297992.1  vam6/Vps39-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0JSW1, A0A8C0NXL2, A0A8C0SFZ7, A0A8I3NU55, A0A8I3NUC9
    Related
    ENSCAFP00845024866.1, ENSCAFT00845031776.1
    Conserved Domains (3) summary
    pfam10366
    Location:449 → 551
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:761 → 869
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 280
    CNH; CNH domain

  3. XM_038442065.1 → XP_038297993.1  vam6/Vps39-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0SFZ7, A0A8I3NUC9
    Conserved Domains (3) summary
    pfam10366
    Location:325 → 427
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:637 → 745
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:2 → 156
    CNH; CNH domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    9221763..9268866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038516549.1 → XP_038372477.1  vam6/Vps39-like protein isoform X3

    Conserved Domains (3) summary
    pfam10366
    Location:460 → 562
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:772 → 880
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 291
    CNH; CNH domain

  2. XM_038516547.1 → XP_038372475.1  vam6/Vps39-like protein isoform X1

    Conserved Domains (3) summary
    pfam10366
    Location:449 → 551
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:761 → 869
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 280
    CNH; CNH domain

  3. XM_038516548.1 → XP_038372476.1  vam6/Vps39-like protein isoform X2

    Conserved Domains (3) summary
    pfam10366
    Location:325 → 427
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:637 → 745
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:2 → 156
    CNH; CNH domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    9326778..9373930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038644445.1 → XP_038500373.1  vam6/Vps39-like protein isoform X3

    Conserved Domains (3) summary
    pfam10366
    Location:460 → 562
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:772 → 880
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 291
    CNH; CNH domain

  2. XM_038644443.1 → XP_038500371.1  vam6/Vps39-like protein isoform X1

    Conserved Domains (3) summary
    pfam10366
    Location:449 → 551
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:761 → 869
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 280
    CNH; CNH domain

  3. XM_038644444.1 → XP_038500372.1  vam6/Vps39-like protein isoform X2

    Conserved Domains (3) summary
    pfam10366
    Location:325 → 427
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:637 → 745
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:2 → 156
    CNH; CNH domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    9461083..9508187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038580160.1 → XP_038436088.1  vam6/Vps39-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0P521, A0A8C0SFZ7, A0A8I3NUC9, A0A8I3NYS1
    Conserved Domains (3) summary
    pfam10366
    Location:460 → 562
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:772 → 880
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 291
    CNH; CNH domain

  2. XM_038580158.1 → XP_038436086.1  vam6/Vps39-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0JSW1, A0A8C0NXL2, A0A8C0SFZ7, A0A8I3NU55, A0A8I3NUC9
    Conserved Domains (3) summary
    pfam10366
    Location:449 → 551
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:761 → 869
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 280
    CNH; CNH domain

  3. XM_038580159.1 → XP_038436087.1  vam6/Vps39-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0SFZ7, A0A8I3NUC9
    Conserved Domains (3) summary
    pfam10366
    Location:325 → 427
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:637 → 745
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:2 → 156
    CNH; CNH domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    9224925..9271967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014109568.3 → XP_013965043.1  vam6/Vps39-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0P521, A0A8C0SFZ7, A0A8I3NUC9, A0A8I3NYS1
    Conserved Domains (3) summary
    pfam10366
    Location:460 → 562
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:772 → 880
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 291
    CNH; CNH domain

  2. XM_544640.6 → XP_544640.2  vam6/Vps39-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0JSW1, A0A8C0NXL2, A0A8C0SFZ7, A0A8I3NU55, A0A8I3NUC9
    Conserved Domains (3) summary
    pfam10366
    Location:449 → 551
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:761 → 869
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:20 → 280
    CNH; CNH domain

  3. XM_022412997.1 → XP_022268705.1  vam6/Vps39-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0SFZ7, A0A8I3NUC9
    Conserved Domains (3) summary
    pfam10366
    Location:325 → 427
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:637 → 745
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:2 → 156
    CNH; CNH domain
Nucleotide Protein
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