U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VPS18 VPS18 core subunit of CORVET and HOPS complexes [ Canis lupus familiaris (dog) ]

Gene ID: 487503, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
VPS18provided by VGNC
Official Full Name
VPS18 core subunit of CORVET and HOPS complexesprovided by VGNC
Primary source
VGNC:VGNC:48279
See related
Ensembl:ENSCAFG00845029092
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See VPS18 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (8156484..8165382)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (8082485..8091381)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (8317470..8326365)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (8079695..8088582)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (8186066..8194955)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor, Kunitz type 1 Neighboring gene ras homolog family member V Neighboring gene uncharacterized LOC111093309 Neighboring gene delta like canonical Notch ligand 4 Neighboring gene ChaC glutathione specific gamma-glutamylcyclotransferase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vacuolar protein sorting-associated protein 18 homolog; LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog
Names
VPS18, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    8156484..8165382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038442006.1 → XP_038297934.1  vacuolar protein sorting-associated protein 18 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0JW33, A0A8C0P7C4, A0A8C0TZ71, A0A8I3Q5H4
    Related
    ENSCAFP00845040407.1, ENSCAFT00845051495.1
    Conserved Domains (3) summary
    cd16689
    Location:851 → 881
    RING-H2_Vps18; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 18 (Vps18) and similar proteins
    pfam00637
    Location:615 → 743
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:291 → 434
    Pep3_Vps18; Pep3/Vps18/deep orange family

  2. XM_038442007.1 → XP_038297935.1  vacuolar protein sorting-associated protein 18 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0TZ71
    Related
    ENSCAFP00845040377.1, ENSCAFT00845051463.1
    Conserved Domains (3) summary
    cd16689
    Location:783 → 813
    RING-H2_Vps18; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 18 (Vps18) and similar proteins
    pfam00637
    Location:547 → 675
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:223 → 366
    Pep3_Vps18; Pep3/Vps18/deep orange family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    8079695..8088582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038516496.1 → XP_038372424.1  LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    8186066..8194955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038644369.1 → XP_038500297.1  vacuolar protein sorting-associated protein 18 homolog isoform X1

  2. XM_038644370.1 → XP_038500298.1  vacuolar protein sorting-associated protein 18 homolog isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    8317470..8326365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038580087.1 → XP_038436015.1  vacuolar protein sorting-associated protein 18 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0JW33, A0A8C0P7C4, A0A8C0TZ71, A0A8I3Q5H4
    Conserved Domains (3) summary
    cd16689
    Location:851 → 881
    RING-H2_Vps18; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 18 (Vps18) and similar proteins
    pfam00637
    Location:615 → 743
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:291 → 434
    Pep3_Vps18; Pep3/Vps18/deep orange family

  2. XM_038580088.1 → XP_038436016.1  vacuolar protein sorting-associated protein 18 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0TZ71
    Conserved Domains (3) summary
    cd16689
    Location:783 → 813
    RING-H2_Vps18; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 18 (Vps18) and similar proteins
    pfam00637
    Location:547 → 675
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:223 → 366
    Pep3_Vps18; Pep3/Vps18/deep orange family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    8082485..8091381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_544627.7 → XP_544627.3  vacuolar protein sorting-associated protein 18 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0JW33, A0A8C0P7C4, A0A8C0TZ71, A0A8I3Q5H4
    Conserved Domains (3) summary
    cd16689
    Location:851 → 881
    RING-H2_Vps18; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 18 (Vps18) and similar proteins
    pfam00637
    Location:615 → 743
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:291 → 434
    Pep3_Vps18; Pep3/Vps18/deep orange family

  2. XM_022412692.2 → XP_022268400.1  vacuolar protein sorting-associated protein 18 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0TZ71
    Conserved Domains (3) summary
    cd16689
    Location:783 → 813
    RING-H2_Vps18; RING finger, H2 subclass, found in vacuolar protein sorting-associated protein 18 (Vps18) and similar proteins
    pfam00637
    Location:547 → 675
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:223 → 366
    Pep3_Vps18; Pep3/Vps18/deep orange family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials