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CFAP43 cilia and flagella associated protein 43 [ Canis lupus familiaris (dog) ]

Gene ID: 486877, updated on 17-Aug-2024

Summary

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Official Symbol
CFAP43provided by VGNC
Official Full Name
cilia and flagella associated protein 43provided by VGNC
Primary source
VGNC:VGNC:39162
See related
Ensembl:ENSCAFG00845029264
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
WDR96
Orthologs
human mouse all
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Genomic context

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See CFAP43 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
38
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (16921627..17033264, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (16616036..16727568, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (16636948..16748476, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (16469712..16581193, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (16498208..16609787, complement)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866581 Neighboring gene SWI5 dependent homologous recombination repair protein 1 Neighboring gene 40S ribosomal protein S3a-like Neighboring gene glutathione S-transferase omega 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cilia- and flagella-associated protein 43
Names
WD repeat domain 96

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    16921627..17033264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440492.1 → XP_038296420.1  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A8I3Q0C4
    Conserved Domains (2) summary
    COG1196
    Location:704 → 1467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  2. XM_038440490.1 → XP_038296418.1  cilia- and flagella-associated protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A8I3Q0C4
    Related
    ENSCAFP00845040647.1, ENSCAFT00845051802.1
    Conserved Domains (2) summary
    COG1196
    Location:704 → 1536
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  3. XM_038440491.1 → XP_038296419.1  cilia- and flagella-associated protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q0C4
    Conserved Domains (2) summary
    COG1196
    Location:665 → 1497
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 668
    WD40; WD40 repeat [General function prediction only]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    16469712..16581193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515113.1 → XP_038371041.1  cilia- and flagella-associated protein 43 isoform X3

  2. XM_038515111.1 → XP_038371039.1  cilia- and flagella-associated protein 43 isoform X1

  3. XM_038515112.1 → XP_038371040.1  cilia- and flagella-associated protein 43 isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    16498208..16609787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642901.1 → XP_038498829.1  cilia- and flagella-associated protein 43 isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:704 → 1467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  2. XM_038642899.1 → XP_038498827.1  cilia- and flagella-associated protein 43 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:704 → 1536
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  3. XM_038642900.1 → XP_038498828.1  cilia- and flagella-associated protein 43 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:665 → 1497
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 668
    WD40; WD40 repeat [General function prediction only]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    16636948..16748476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578720.1 → XP_038434648.1  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A8C0P5G1, A0A8P0SFD6
    Conserved Domains (2) summary
    COG1196
    Location:704 → 1467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  2. XM_038578718.1 → XP_038434646.1  cilia- and flagella-associated protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5G1, A0A8P0SFD6
    Conserved Domains (2) summary
    COG1196
    Location:704 → 1536
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  3. XM_038578719.1 → XP_038434647.1  cilia- and flagella-associated protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A8C0P5G1, A0A8P0SFD6
    Conserved Domains (2) summary
    COG1196
    Location:665 → 1497
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 668
    WD40; WD40 repeat [General function prediction only]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    16616036..16727568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014109139.3 → XP_013964614.2  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A8C0P5G1, A0A8P0SFD6
    Conserved Domains (2) summary
    COG1196
    Location:704 → 1467
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  2. XM_014109137.3 → XP_013964612.2  cilia- and flagella-associated protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A8C0P5G1, A0A8P0SFD6
    Conserved Domains (2) summary
    COG1196
    Location:704 → 1536
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 524
    WD40; WD40 repeat [General function prediction only]

  3. XM_014109138.3 → XP_013964613.2  cilia- and flagella-associated protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A8C0P5G1, A0A8P0SFD6
    Conserved Domains (2) summary
    COG1196
    Location:665 → 1497
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:315 → 668
    WD40; WD40 repeat [General function prediction only]
Nucleotide Protein
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