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PAN3 poly(A) specific ribonuclease subunit PAN3 [ Canis lupus familiaris (dog) ]

Gene ID: 486024, updated on 17-Aug-2024

Summary

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Official Symbol
PAN3provided by VGNC
Official Full Name
poly(A) specific ribonuclease subunit PAN3provided by VGNC
Primary source
VGNC:VGNC:59088
See related
Ensembl:ENSCAFG00845023866
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PAN3 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
21
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (11544373..11678148, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (11479225..11613731, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (11474666..11609590, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (11440197..11574226, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (11432789..11566165, complement)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U3 Neighboring gene fms related receptor tyrosine kinase 1 Neighboring gene fms related receptor tyrosine kinase 3 Neighboring gene dynein light chain roadblock-type 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of PAN complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAN2-PAN3 deadenylation complex subunit PAN3; LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex subunit PAN3
Names
PAN3 poly(A) specific ribonuclease subunit homolog
PAN3 polyA specific ribonuclease subunit homolog
XP_005635562.1
XP_005635563.1
XP_005635564.1
XP_005635565.1
XP_013962863.1
XP_038290898.1
XP_038290899.1
XP_038290900.1
XP_038290901.1
XP_038290902.1
XP_038290903.1
XP_038365883.1
XP_038365884.1
XP_038365885.1
XP_038365886.1
XP_038365887.1
XP_038365888.1
XP_038429314.1
XP_038429315.1
XP_038429316.1
XP_038429317.1
XP_038429318.1
XP_038429319.1
XP_038493608.1
XP_543150.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    11544373..11678148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038434971.1 → XP_038290899.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T523
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:760 → 897
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:511 → 679
    PKc_like; Protein Kinases, catalytic domain

  2. XM_038434973.1 → XP_038290901.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0T424
    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:707 → 844
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 368
    dermokine
    cl21453
    Location:458 → 626
    PKc_like; Protein Kinases, catalytic domain

  3. XM_038434970.1 → XP_038290898.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T523, A0A8I3PNQ2
    Related
    ENSCAFP00845033063.1, ENSCAFT00845042156.1
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 898
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

  4. XM_038434974.1 → XP_038290902.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LMM0, A0A8I3PLB0
    Related
    ENSCAFP00845033335.1, ENSCAFT00845042526.1
    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:688 → 825
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 358
    dermokine
    cl21453
    Location:439 → 607
    PKc_like; Protein Kinases, catalytic domain

  5. XM_038434972.1 → XP_038290900.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X6

    UniProtKB/TrEMBL
    A0A8C0T3M3, A0A8I3PQ88
    Related
    ENSCAFP00845033214.1, ENSCAFT00845042367.1
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:742 → 879
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:493 → 661
    PKc_like; Protein Kinases, catalytic domain

  6. XM_038434975.1 → XP_038290903.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X5

    UniProtKB/TrEMBL
    A0A8C0T3U0
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 814
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

RNA

  1. XR_005301582.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    11440197..11574226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038509956.1 → XP_038365884.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2

    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:760 → 897
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:511 → 679
    PKc_like; Protein Kinases, catalytic domain

  2. XM_038509958.1 → XP_038365886.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X3

    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:707 → 844
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 368
    dermokine
    cl21453
    Location:458 → 626
    PKc_like; Protein Kinases, catalytic domain

  3. XM_038509955.1 → XP_038365883.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1

    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 898
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

  4. XM_038509959.1 → XP_038365887.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X4

    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:688 → 825
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 358
    dermokine
    cl21453
    Location:439 → 607
    PKc_like; Protein Kinases, catalytic domain

  5. XM_038509957.1 → XP_038365885.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X6

    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:742 → 879
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:493 → 661
    PKc_like; Protein Kinases, catalytic domain

  6. XM_038509960.1 → XP_038365888.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X5

    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 814
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

RNA

  1. XR_005344586.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    11432789..11566165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038637680.1 → XP_038493608.1  LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex subunit PAN3 isoform X6

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    11474666..11609590 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038573387.1 → XP_038429315.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T523
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:760 → 897
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:511 → 679
    PKc_like; Protein Kinases, catalytic domain

  2. XM_038573389.1 → XP_038429317.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0T424
    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:707 → 844
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 368
    dermokine
    cl21453
    Location:458 → 626
    PKc_like; Protein Kinases, catalytic domain

  3. XM_038573386.1 → XP_038429314.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T523, A0A8I3PNQ2
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 898
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

  4. XM_038573390.1 → XP_038429318.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LMM0, A0A8I3PLB0
    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:688 → 825
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 358
    dermokine
    cl21453
    Location:439 → 607
    PKc_like; Protein Kinases, catalytic domain

  5. XM_038573388.1 → XP_038429316.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X6

    UniProtKB/TrEMBL
    A0A8C0T3M3, A0A8I3PQ88
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:742 → 879
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:493 → 661
    PKc_like; Protein Kinases, catalytic domain

  6. XM_038573391.1 → XP_038429319.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X5

    UniProtKB/TrEMBL
    A0A8C0T3U0
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 814
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

RNA

  1. XR_005378426.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    11479225..11613731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005635506.4 → XP_005635563.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T523
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:760 → 897
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:511 → 679
    PKc_like; Protein Kinases, catalytic domain

  2. XM_005635507.4 → XP_005635564.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0T424
    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:707 → 844
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 368
    dermokine
    cl21453
    Location:458 → 626
    PKc_like; Protein Kinases, catalytic domain

  3. XM_005635505.4 → XP_005635562.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T523, A0A8I3PNQ2
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 898
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

  4. XM_005635508.4 → XP_005635565.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LMM0, A0A8I3PLB0
    Conserved Domains (4) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:688 → 825
    Pan3_PK; Pan3 Pseudokinase domain
    cl11081
    Location:210 → 358
    dermokine
    cl21453
    Location:439 → 607
    PKc_like; Protein Kinases, catalytic domain

  5. XM_543150.7 → XP_543150.3  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X6

    UniProtKB/TrEMBL
    A0A8C0T3M3, A0A8I3PQ88
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:742 → 879
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:493 → 661
    PKc_like; Protein Kinases, catalytic domain

  6. XM_014107388.3 → XP_013962863.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X5

    UniProtKB/TrEMBL
    A0A8C0T3U0
    Conserved Domains (3) summary
    pfam00642
    Location:49 → 68
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam18101
    Location:761 → 814
    Pan3_PK; Pan3 Pseudokinase domain
    cl21453
    Location:512 → 680
    PKc_like; Protein Kinases, catalytic domain

RNA

  1. XR_002619014.2 RNA Sequence

Nucleotide Protein
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