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GATA5 GATA binding protein 5 [ Canis lupus familiaris (dog) ]

Gene ID: 485961, updated on 17-Aug-2024

Summary

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Official Symbol
GATA5provided by VGNC
Official Full Name
GATA binding protein 5provided by VGNC
Primary source
VGNC:VGNC:41124
See related
Ensembl:ENSCAFG00845017212
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See GATA5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 24 NC_051828.1 (47288132..47298276, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 24 NC_006606.4 (45668394..45678477, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 24 NC_049245.1 (47266944..47277059, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 24 NC_049284.1 (46389267..46399377, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 24 NC_049765.1 (46512623..46522731, complement)

Chromosome 24 - NC_051828.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865715 Neighboring gene RBBP8 N-terminal like Neighboring gene uncharacterized LOC119865716 Neighboring gene uncharacterized LOC119865718 Neighboring gene uncharacterized LOC119865719 Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor GATA-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051828.1 Reference ROS_Cfam_1.0

    Range
    47288132..47298276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038434287.1 → XP_038290215.1  transcription factor GATA-5

    UniProtKB/TrEMBL
    A0A8C0JHZ7, A0A8C0N6R0, A0A8I3RZQ7
    Related
    ENSCAFP00845023888.1, ENSCAFT00845030456.1
    Conserved Domains (3) summary
    COG5641
    Location:192 → 362
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd00202
    Location:191 → 235
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1 → 177
    GATA-N; GATA-type transcription activator, N-terminal

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049284.1 Alternate UMICH_Zoey_3.1

    Range
    46389267..46399377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038509448.1 → XP_038365376.1  transcription factor GATA-5

    Conserved Domains (3) summary
    COG5641
    Location:192 → 362
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd00202
    Location:191 → 235
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1 → 177
    GATA-N; GATA-type transcription activator, N-terminal

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049765.1 Alternate UNSW_CanFamBas_1.0

    Range
    46512623..46522731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038637081.1 → XP_038493009.1  transcription factor GATA-5

    Conserved Domains (3) summary
    COG5641
    Location:192 → 362
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd00202
    Location:191 → 235
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1 → 177
    GATA-N; GATA-type transcription activator, N-terminal

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049245.1 Alternate UU_Cfam_GSD_1.0

    Range
    47266944..47277059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038572804.1 → XP_038428732.1  transcription factor GATA-5

    UniProtKB/TrEMBL
    A0A8C0JHZ7, A0A8C0N6R0, A0A8I3RZQ7
    Conserved Domains (3) summary
    COG5641
    Location:192 → 362
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd00202
    Location:191 → 235
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1 → 177
    GATA-N; GATA-type transcription activator, N-terminal

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006606.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    45668394..45678477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_543086.6 → XP_543086.2  transcription factor GATA-5

    UniProtKB/TrEMBL
    A0A8C0JHZ7, A0A8C0N6R0, A0A8I3RZQ7
    Conserved Domains (3) summary
    COG5641
    Location:192 → 362
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd00202
    Location:191 → 235
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:1 → 177
    GATA-N; GATA-type transcription activator, N-terminal
Nucleotide Protein
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