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SIM1 protein involved in control of DNA replication [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4851929, updated on 21-Dec-2023

Summary

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Gene symbol
SIM1
Gene description
protein involved in control of DNA replication
Locus tag
PICST_69526
Gene type
protein coding
RNA name
protein involved in control of DNA replication
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See SIM1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_009068.1 (3218178..3219697)

Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene serine/threonine protein kinase Neighboring gene Autophagy-related protein 12 (Autophagy-related ubiquitin-like modifier ATG12) Neighboring gene YAP1 binding protein 2 (YBP2)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in fungal-type cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in fungal-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
protein involved in control of DNA replication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009068.1 Reference assembly

    Range
    3218178..3219697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001386903.1 → XP_001386940.1  protein involved in control of DNA replication [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001386940.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3GI30
    Conserved Domains (1) summary
    pfam03856
    Location:104 → 347
    SUN; Beta-glucosidase (SUN family)
Nucleotide Protein
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