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CHS2.2 chitin synthase 2.2 [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4851469, updated on 26-Jun-2024

Summary

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Gene symbol
CHS2.2
Gene description
chitin synthase 2.2
Locus tag
PICST_51281
Gene type
protein coding
RNA name
chitin synthase 2.2
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See CHS2.2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_009068.1 (1896022..1899054, complement)

Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene F1F0-ATPase complex, F1 alpha subunit Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
chitin synthase 2.2
XP_001387995.2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009068.1 Reference assembly

    Range
    1896022..1899054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001387958.1 → XP_001387995.2  chitin synthase 2.2 [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001387995.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3GGS0
    Conserved Domains (5) summary
    COG1215
    Location:416 → 760
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
    pfam01644
    Location:305 → 467
    Chitin_synth_1; Chitin synthase
    pfam08407
    Location:229 → 303
    Chitin_synth_1N; Chitin synthase N-terminal
    cl01421
    Location:646 → 821
    DUF1211; Protein of unknown function (DUF1211)
    cl11394
    Location:445 → 691
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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