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UBP6 deubiquitinating enzyme [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4850991, updated on 21-Dec-2023

Summary

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Gene symbol
UBP6
Gene description
deubiquitinating enzyme
Locus tag
PICST_37903
Gene type
protein coding
RNA name
deubiquitinating enzyme
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See UBP6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_009068.1 (649019..650464, complement)

Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Autophagy-related protein 18 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
deubiquitinating enzyme
XP_001387762.2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009068.1 Reference assembly

    Range
    649019..650464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001387725.1 → XP_001387762.2  deubiquitinating enzyme, partial [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001387762.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3GFE2
    Conserved Domains (3) summary
    cd02657
    Location:102 → 477
    Peptidase_C19A; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl ...
    pfam00443
    Location:100 → 476
    UCH; Ubiquitin carboxyl-terminal hydrolase
    cl00155
    Location:1 → 69
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
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