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PALM paralemmin [ Canis lupus familiaris (dog) ]

Gene ID: 485098, updated on 17-Aug-2024

Summary

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Official Symbol
PALMprovided by VGNC
Official Full Name
paralemminprovided by VGNC
Primary source
VGNC:VGNC:54980
See related
Ensembl:ENSCAFG00845014695
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PALM in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (58590141..58611532, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (57649827..57670978, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (58327378..58348540, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (57644561..57665710, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (58124083..58145219, complement)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene vegetative cell wall protein gp1-like Neighboring gene mitotic spindle positioning Neighboring gene serine protease 57 Neighboring gene follistatin like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of adenylate cyclase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of filopodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paralemmin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    58590141..58611532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038429373.1 → XP_038285301.1  paralemmin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTP5, A0A8C0S8Z9
    Conserved Domains (2) summary
    COG1196
    Location:12 → 101
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 377
    Paralemmin

  2. XM_038429374.1 → XP_038285302.1  paralemmin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KWU7
    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 345
    Paralemmin

  3. XM_038429372.1 → XP_038285300.1  paralemmin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8Z9
    Related
    ENSCAFP00845020743.1, ENSCAFT00845026309.1
    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 389
    Paralemmin

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    57644561..57665710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038504898.1 → XP_038360826.1  paralemmin-1 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:12 → 101
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 377
    Paralemmin

  2. XM_038504899.1 → XP_038360827.1  paralemmin-1 isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 345
    Paralemmin

  3. XM_038504897.1 → XP_038360825.1  paralemmin-1 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 389
    Paralemmin

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    58124083..58145219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038632165.1 → XP_038488093.1  paralemmin-1 isoform X2

  2. XM_038632166.1 → XP_038488094.1  paralemmin-1 isoform X3

  3. XM_038632164.1 → XP_038488092.1  paralemmin-1 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    58327378..58348540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038568056.1 → XP_038423984.1  paralemmin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTP5, A0A8C0S8Z9
    Conserved Domains (2) summary
    COG1196
    Location:12 → 101
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 377
    Paralemmin

  2. XM_038568057.1 → XP_038423985.1  paralemmin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KWU7
    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 345
    Paralemmin

  3. XM_038568055.1 → XP_038423983.1  paralemmin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8Z9
    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 389
    Paralemmin

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    57649827..57670978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_542216.6 → XP_542216.4  paralemmin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTP5, A0A8C0S8Z9
    Conserved Domains (2) summary
    COG1196
    Location:12 → 101
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:71 → 377
    Paralemmin

  2. XM_014122256.3 → XP_013977731.1  paralemmin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0KWU7
    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 345
    Paralemmin

  3. XM_014122255.3 → XP_013977730.1  paralemmin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0S8Z9
    Conserved Domains (2) summary
    COG1196
    Location:24 → 113
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam03285
    Location:83 → 389
    Paralemmin
Nucleotide Protein
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