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CNN1 calponin 1 [ Canis lupus familiaris (dog) ]

Gene ID: 484937, updated on 17-Aug-2024

Summary

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Official Symbol
CNN1provided by VGNC
Official Full Name
calponin 1provided by VGNC
Primary source
VGNC:VGNC:57306
See related
Ensembl:ENSCAFG00845018227
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CNN1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (50349147..50355718, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (49701977..49708548, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (50228604..50235177, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (49559474..49566041, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (49985630..49992192, complement)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene acid phosphatase 5, tartrate resistant Neighboring gene elongation factor 1 Neighboring gene ECSIT signaling integrator Neighboring gene zinc finger protein 653

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calponin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    50349147..50355718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038428526.1 → XP_038284454.1  calponin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JWE5, A0A8C0SQN1, A0A8I3S0B8, A0A8I3S0C2
    Related
    ENSCAFP00845025200.1, ENSCAFT00845032236.1
    Conserved Domains (2) summary
    pfam00402
    Location:164 → 188
    Calponin; Calponin family repeat
    cd21282
    Location:27 → 134
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

  2. XM_038428525.1 → XP_038284453.1  calponin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3P2D0, A0A8I3S0C2, A0A8P0PRX4
    Related
    ENSCAFP00845025264.1, ENSCAFT00845032320.1
    Conserved Domains (2) summary
    pfam00402
    Location:184 → 208
    Calponin; Calponin family repeat
    cd21282
    Location:47 → 154
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    49559474..49566041 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038504165.1 → XP_038360093.1  calponin-1 isoform X2

    Conserved Domains (2) summary
    pfam00402
    Location:164 → 188
    Calponin; Calponin family repeat
    cd21282
    Location:27 → 134
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

  2. XM_038504164.1 → XP_038360092.1  calponin-1 isoform X1

    Conserved Domains (2) summary
    pfam00402
    Location:184 → 208
    Calponin; Calponin family repeat
    cd21282
    Location:47 → 154
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    49985630..49992192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038631343.1 → XP_038487271.1  calponin-1 isoform X2

    Conserved Domains (2) summary
    pfam00402
    Location:164 → 188
    Calponin; Calponin family repeat
    cd21282
    Location:27 → 134
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

  2. XM_038631342.1 → XP_038487270.1  calponin-1 isoform X1

    Conserved Domains (2) summary
    pfam00402
    Location:184 → 208
    Calponin; Calponin family repeat
    cd21282
    Location:47 → 154
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    50228604..50235177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038567194.1 → XP_038423122.1  calponin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JWE5, A0A8C0SQN1, A0A8I3S0B8, A0A8I3S0C2
    Conserved Domains (2) summary
    pfam00402
    Location:164 → 188
    Calponin; Calponin family repeat
    cd21282
    Location:27 → 134
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

  2. XM_038567193.1 → XP_038423121.1  calponin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3P2D0, A0A8I3S0C2, A0A8P0PRX4
    Conserved Domains (2) summary
    pfam00402
    Location:184 → 208
    Calponin; Calponin family repeat
    cd21282
    Location:47 → 154
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    49701977..49708548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_542053.7 → XP_542053.1  calponin-1 isoform X2

    See identical proteins and their annotated locations for XP_542053.1

    UniProtKB/TrEMBL
    A0A8C0JWE5, A0A8C0SQN1, A0A8I3S0B8, A0A8I3S0C2
    Conserved Domains (2) summary
    pfam00402
    Location:164 → 188
    Calponin; Calponin family repeat
    cd21282
    Location:27 → 134
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins

  2. XM_014122382.3 → XP_013977857.2  calponin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3P2D0, A0A8I3S0C2, A0A8P0PRX4
    Conserved Domains (2) summary
    pfam00402
    Location:184 → 208
    Calponin; Calponin family repeat
    cd21282
    Location:47 → 154
    CH_CNN1; calponin homology (CH) domain found in calponin-1 and similar proteins
Nucleotide Protein
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