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LRRN1 leucine rich repeat neuronal 1 [ Canis lupus familiaris (dog) ]

Gene ID: 484682, updated on 17-Aug-2024

Summary

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Official Symbol
LRRN1provided by VGNC
Official Full Name
leucine rich repeat neuronal 1provided by VGNC
Primary source
VGNC:VGNC:42824
See related
Ensembl:ENSCAFG00845012344
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LRRN1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (13645454..13684832, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (13580502..13619610, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (13672116..13711238, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (13348313..13387426, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (13683051..13722396, complement)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein SA-like Neighboring gene uncharacterized LOC102152678 Neighboring gene uncharacterized LOC111091259 Neighboring gene uncharacterized LOC102152871 Neighboring gene uncharacterized LOC119864642 Neighboring gene uncharacterized LOC119864643 Neighboring gene uncharacterized LOC102152920

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat neuronal protein 1
Names
leucine-rich repeats and calponin homology (CH) domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    13645454..13684832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038427094.1 → XP_038283022.1  leucine-rich repeat neuronal protein 1

    UniProtKB/TrEMBL
    A0A8C0KNE2, A0A8C0Q7G2, A0A8I3NB61
    Related
    ENSCAFP00845017245.1, ENSCAFT00845021932.1
    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_038427095.1 → XP_038283023.1  leucine-rich repeat neuronal protein 1

    UniProtKB/TrEMBL
    A0A8C0KNE2, A0A8C0Q7G2, A0A8I3NB61
    Related
    ENSCAFP00845017263.1, ENSCAFT00845021957.1
    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    13348313..13387426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038502865.1 → XP_038358793.1  leucine-rich repeat neuronal protein 1

    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_038502866.1 → XP_038358794.1  leucine-rich repeat neuronal protein 1

    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    13683051..13722396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038629925.1 → XP_038485853.1  leucine-rich repeat neuronal protein 1

    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_038629926.1 → XP_038485854.1  leucine-rich repeat neuronal protein 1

    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    13672116..13711238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038565801.1 → XP_038421729.1  leucine-rich repeat neuronal protein 1

    UniProtKB/TrEMBL
    A0A8C0KNE2, A0A8C0Q7G2, A0A8I3NB61
    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_038565803.1 → XP_038421731.1  leucine-rich repeat neuronal protein 1

    UniProtKB/TrEMBL
    A0A8C0KNE2, A0A8C0Q7G2, A0A8I3NB61
    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    13580502..13619610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003432750.5 → XP_003432798.1  leucine-rich repeat neuronal protein 1

    See identical proteins and their annotated locations for XP_003432798.1

    UniProtKB/TrEMBL
    A0A8C0KNE2, A0A8C0Q7G2, A0A8I3NB61
    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_038455618.1 → XP_038311546.1  leucine-rich repeat neuronal protein 1

    UniProtKB/TrEMBL
    A0A8C0KNE2, A0A8C0Q7G2, A0A8I3NB61
    Conserved Domains (9) summary
    smart00013
    Location:32 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    smart00060
    Location:531 → 600
    FN3; Fibronectin type 3 domain
    smart00082
    Location:371 → 419
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:339 → 362
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:97 → 120
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07679
    Location:429 → 516
    I-set; Immunoglobulin I-set domain
    pfam13855
    Location:312 → 373
    LRR_8; Leucine rich repeat
    cd00096
    Location:433 → 438
    Ig; Ig strand A' [structural motif]
    cd21340
    Location:77 → 279
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein
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