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TPI1 Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4840505, updated on 21-Dec-2023

Summary

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Gene symbol
TPI1
Gene description
Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Locus tag
PICST_91105
Gene type
protein coding
RNA name
Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See TPI1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_009047.1 (1028545..1029406, complement)

Chromosome 7 - NC_009047.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene eukaryotic translation initiation factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009047.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triose-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
XP_001386385.1
  • go_function triose-phosphate isomerase activity
    go_process metabolism

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009047.1 Reference assembly

    Range
    1028545..1029406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001386348.1 → XP_001386385.1  Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001386385.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LZL0
    Conserved Domains (1) summary
    cd00311
    Location:5 → 245
    TIM; Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually ...
Nucleotide Protein
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