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TPS2 threalose-6-phosphate phosphatase [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4840387, updated on 21-Dec-2023

Summary

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Gene symbol
TPS2
Gene description
threalose-6-phosphate phosphatase
Locus tag
PICST_79118
Gene type
protein coding
RNA name
threalose-6-phosphate phosphatase
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See TPS2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_009046.1 (780801..783569)

Chromosome 6 - NC_009046.1Genomic Context describing neighboring genes Neighboring gene transcriptional regulator Neighboring gene Polyadenylate-binding protein, cytoplasmic and nuclear (Poly(A)-binding protein) (PABP) (ARS consensus binding protein ACBP-67) (Polyadenylate tail-binding protein) Neighboring gene alcohol acyl transferase Neighboring gene protein for resistance to o-dinitrobenzene, calcium, and zinc

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009046.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fungal-type cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
threalose-6-phosphate phosphatase
XP_001385509.2
  • Trehalose-phosphatase (Trehalose 6-phosphate phosphatase) (TPP)
    go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; trehalose-phosphatase activity
    go_process trehalose biosynthesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009046.1 Reference assembly

    Range
    780801..783569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001385472.1 → XP_001385509.2  threalose-6-phosphate phosphatase [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001385509.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LXL1
    Conserved Domains (1) summary
    PRK14501
    Location:76 → 823
    PRK14501; putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials