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LCT lactase [ Canis lupus familiaris (dog) ]

Gene ID: 483898, updated on 5-Mar-2024

Summary

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Official Symbol
LCTprovided by VGNC
Official Full Name
lactaseprovided by VGNC
Primary source
VGNC:VGNC:42616
See related
Ensembl:ENSCAFG00845009807
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LCT in Genome Data Viewer
Location:
chromosome: 19
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 19 NC_051823.1 (40014481..40065894, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 19 NC_006601.4 (38812141..38863510, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 19 NC_049240.1 (40048815..40100194, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 19 NC_049279.1 (38656504..38707872, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 19 NC_049760.1 (38815944..38867284, complement)

Chromosome 19 - NC_051823.1Genomic Context describing neighboring genes Neighboring gene R3H domain containing 1 Neighboring gene elongation factor 1-gamma-like Neighboring gene UBX domain protein 4 Neighboring gene minichromosome maintenance complex component 6 Neighboring gene small nucleolar SNORD12/SNORD106

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactase-phlorizin hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051823.1 Reference ROS_Cfam_1.0

    Range
    40014481..40065894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038425585.1 → XP_038281513.1  lactase-phlorizin hydrolase

    UniProtKB/TrEMBL
    A0A8C0KUQ1, A0A8C0NUM2, A0A8C0SNV0, A0A8I3NDB4
    Related
    ENSCAFP00845013463.1, ENSCAFT00845017274.1
    Conserved Domains (2) summary
    pfam00232
    Location:1357 → 1824
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl23725
    Location:367 → 831
    Glyco_hydro; Glycosyl hydrolases

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049279.1 Alternate UMICH_Zoey_3.1

    Range
    38656504..38707872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038502279.1 → XP_038358207.1  lactase-phlorizin hydrolase

    Conserved Domains (2) summary
    pfam00232
    Location:1357 → 1824
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl23725
    Location:367 → 831
    Glyco_hydro; Glycosyl hydrolases

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049760.1 Alternate UNSW_CanFamBas_1.0

    Range
    38815944..38867284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038628633.1 → XP_038484561.1  lactase-phlorizin hydrolase

    Conserved Domains (2) summary
    pfam00232
    Location:1357 → 1824
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl23725
    Location:367 → 831
    Glyco_hydro; Glycosyl hydrolases

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049240.1 Alternate UU_Cfam_GSD_1.0

    Range
    40048815..40100194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038564534.1 → XP_038420462.1  lactase-phlorizin hydrolase

    UniProtKB/TrEMBL
    A0A8C0KUQ1, A0A8C0NUM2, A0A8C0SNV0, A0A8I3NDB4
    Conserved Domains (2) summary
    pfam00232
    Location:1357 → 1824
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl23725
    Location:367 → 831
    Glyco_hydro; Glycosyl hydrolases

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006601.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38812141..38863510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038454584.1 → XP_038310512.1  lactase-phlorizin hydrolase

    UniProtKB/TrEMBL
    A0A8C0KUQ1, A0A8C0NUM2, A0A8C0SNV0, A0A8I3NDB4
    Conserved Domains (2) summary
    pfam00232
    Location:1357 → 1824
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl23725
    Location:367 → 831
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
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