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PMM1 phosphomannomutase [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4837955, updated on 21-Dec-2023

Summary

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Gene symbol
PMM1
Gene description
phosphomannomutase
Locus tag
PICST_77262
Gene type
protein coding
RNA name
phosphomannomutase
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See PMM1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_009043.1 (500900..501740)

Chromosome 3 - NC_009043.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene 60S ribosomal protein L10 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009043.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphomannomutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
phosphomannomutase
XP_001383369.1
  • involved in synthesis of GDP-mannose and dolichol-phosphate-mannose required for protein assembly in endoplasmic reticulum
    go_component cytoplasm
    go_function phosphomannomutase activity
    go_process mannose biosynthesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009043.1 Reference assembly

    Range
    500900..501740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001383332.1 → XP_001383369.1  phosphomannomutase [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001383369.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LR94
    Conserved Domains (2) summary
    PTZ00174
    Location:7 → 249
    PTZ00174; phosphomannomutase; Provisional
    TIGR01484
    Location:12 → 233
    HAD-SF-IIB; HAD-superfamily hydrolase, subfamily IIB
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials