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PCK1 phosphoenolpyruvate carboxykinase [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4837950, updated on 21-Dec-2023

Summary

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Gene symbol
PCK1
Gene description
phosphoenolpyruvate carboxykinase
Locus tag
PICST_71471
Gene type
protein coding
RNA name
phosphoenolpyruvate carboxykinase
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See PCK1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_009043.1 (1151243..1153004)

Chromosome 3 - NC_009043.1Genomic Context describing neighboring genes Neighboring gene glycosyl hyrolase, family 3-like protein Neighboring gene hypothetical protein Neighboring gene n-alkane inducible cytochrome P- 450 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009043.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoenolpyruvate carboxykinase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
phosphoenolpyruvate carboxykinase
XP_001383505.1
  • go_process gluconeogenesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009043.1 Reference assembly

    Range
    1151243..1153004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001383468.1 → XP_001383505.1  phosphoenolpyruvate carboxykinase [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001383505.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LS00
    Conserved Domains (1) summary
    PTZ00311
    Location:36 → 551
    PTZ00311; phosphoenolpyruvate carboxykinase; Provisional
Nucleotide Protein
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Molecular Biology Databases
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