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SLC3A2 solute carrier family 3 member 2 [ Canis lupus familiaris (dog) ]

Gene ID: 483777, updated on 17-Aug-2024

Summary

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Official Symbol
SLC3A2provided by VGNC
Official Full Name
solute carrier family 3 member 2provided by VGNC
Primary source
VGNC:VGNC:46410
See related
Ensembl:ENSCAFG00845007354
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
4F2hc
Orthologs
human mouse all
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Genomic context

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See SLC3A2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (54862432..54870971, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (52416355..52424896, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (54325863..54334403, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (53959818..53968341, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (53533954..53542486, complement)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102157191 Neighboring gene solute carrier family 22 member 6 Neighboring gene uncharacterized LOC119864276 Neighboring gene cholinergic receptor muscarinic 1 Neighboring gene U2 spliceosomal RNA Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amino acid transporter heavy chain SLC3A2
Names
4F2 cell-surface antigen heavy chain
solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001314120.2 → NP_001301049.2  amino acid transporter heavy chain SLC3A2

    Status: VALIDATED

    Source sequence(s)
    JAAUVH010000176
    UniProtKB/TrEMBL
    A0A8C0MLF6, A0A8C0T0V7, A0A8I3MWJ8, A0A8P0SJM6
    Related
    ENSCAFP00845010120.1, ENSCAFT00845012985.1
    Conserved Domains (3) summary
    pfam11941
    Location:420 → 527
    DUF3459; Domain of unknown function (DUF3459)
    pfam16028
    Location:62 → 126
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus
    cl07893
    Location:109 → 439
    AmyAc_family; Alpha amylase catalytic domain family

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    54862432..54870971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    53959818..53968341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    53533954..53542486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    54325863..54334403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52416355..52424896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials