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POLR3C RNA polymerase III subunit C [ Canis lupus familiaris (dog) ]

Gene ID: 483159, updated on 17-Aug-2024

Summary

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Official Symbol
POLR3Cprovided by VGNC
Official Full Name
RNA polymerase III subunit Cprovided by VGNC
Primary source
VGNC:VGNC:44802
See related
Ensembl:ENSCAFG00845010680
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See POLR3C in Genome Data Viewer
Location:
chromosome: 17
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (59631014..59642722)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (58102454..58114110)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (59291372..59303029)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (58503834..58515493)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (58564812..58576460)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 115 Neighboring gene 60S ribosomal protein L21-like Neighboring gene 40S ribosomal protein S15a-like Neighboring gene nudix hydrolase 17 Neighboring gene protein inhibitor of activated STAT 3 Neighboring gene ankyrin repeat domain 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC3
Names
polymerase (RNA) III (DNA directed) polypeptide C (62kD)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    59631014..59642722
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038422928.1 → XP_038278856.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8C0NEB9, A0A8I3NI12
    Related
    ENSCAFP00845014710.1, ENSCAFT00845018839.1
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  2. XM_038422927.1 → XP_038278855.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8C0NEB9, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  3. XM_038422929.1 → XP_038278857.1  DNA-directed RNA polymerase III subunit RPC3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 314
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  4. XM_038422930.1 → XP_038278858.1  DNA-directed RNA polymerase III subunit RPC3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 279
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    58503834..58515493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038499415.1 → XP_038355343.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  2. XM_038499414.1 → XP_038355342.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  3. XM_038499416.1 → XP_038355344.1  DNA-directed RNA polymerase III subunit RPC3 isoform X2

    Conserved Domains (2) summary
    pfam05645
    Location:146 → 314
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  4. XM_038499417.1 → XP_038355345.1  DNA-directed RNA polymerase III subunit RPC3 isoform X3

    Conserved Domains (2) summary
    pfam05645
    Location:146 → 279
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    58564812..58576460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038626074.1 → XP_038482002.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

  2. XM_038626073.1 → XP_038482001.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

  3. XM_038626075.1 → XP_038482003.1  DNA-directed RNA polymerase III subunit RPC3 isoform X2

  4. XM_038626076.1 → XP_038482004.1  DNA-directed RNA polymerase III subunit RPC3 isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    59291372..59303029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038561989.1 → XP_038417917.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8C0NEB9, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  2. XM_038561988.1 → XP_038417916.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8C0NEB9, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  3. XM_038561990.1 → XP_038417918.1  DNA-directed RNA polymerase III subunit RPC3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 314
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  4. XM_038561991.1 → XP_038417919.1  DNA-directed RNA polymerase III subunit RPC3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 279
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    58102454..58114110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014120581.3 → XP_013976056.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8C0NEB9, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  2. XM_540277.7 → XP_540277.2  DNA-directed RNA polymerase III subunit RPC3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8C0NEB9, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 345
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  3. XM_005630719.4 → XP_005630776.1  DNA-directed RNA polymerase III subunit RPC3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 314
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  4. XM_022404935.2 → XP_022260643.1  DNA-directed RNA polymerase III subunit RPC3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0L5U8, A0A8C0N9W5, A0A8I3NI12
    Conserved Domains (2) summary
    pfam05645
    Location:146 → 279
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain
Nucleotide Protein
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