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WDR3 WD repeat domain 3 [ Canis lupus familiaris (dog) ]

Gene ID: 483143, updated on 17-Aug-2024

Summary

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Official Symbol
WDR3provided by VGNC
Official Full Name
WD repeat domain 3provided by VGNC
Primary source
VGNC:VGNC:48359
See related
Ensembl:ENSCAFG00845005942
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See WDR3 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (56104479..56133775)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (54868547..54897872)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (55751302..55780612)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (55138420..55167696)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (55176587..55205849)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111090686 Neighboring gene ganglioside induced differentiation associated protein 2 Neighboring gene uncharacterized LOC119869692 Neighboring gene sperm associated antigen 17 Neighboring gene small nucleolar RNA U2-30 Neighboring gene small nucleolar RNA U2-19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    56104479..56133775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038691904.1 → XP_038547832.1  WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A8C0SI43, A0A8I3MVP2
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl29593
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_038691903.1 → XP_038547831.1  WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A8C0SI43, A0A8I3MVP2
    Related
    ENSCAFP00845008186.1, ENSCAFT00845010523.1
    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl29593
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    55138420..55167696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038499336.1 → XP_038355264.1  WD repeat-containing protein 3

    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl29593
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_038499335.1 → XP_038355263.1  WD repeat-containing protein 3

    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl29593
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    55176587..55205849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038625975.1 → XP_038481903.1  WD repeat-containing protein 3

    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl29593
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_038625974.1 → XP_038481902.1  WD repeat-containing protein 3

    Conserved Domains (4) summary
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:804 → 907
    Utp12; Dip2/Utp12 Family
    cl29593
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    55751302..55780612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038561902.1 → XP_038417830.1  WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A8C0SI43, A0A8P0SET5

  2. XM_038561901.1 → XP_038417829.1  WD repeat-containing protein 3

    UniProtKB/TrEMBL
    A0A8C0SI43, A0A8P0SET5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    54868547..54897872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005630674.4 → XP_005630731.1  WD repeat-containing protein 3

    See identical proteins and their annotated locations for XP_005630731.1

    UniProtKB/TrEMBL
    A0A8C0SI43, A0A8P0SET5
    Conserved Domains (5) summary
    COG2319
    Location:85 → 698
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:804 → 905
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_540261.7 → XP_540261.2  WD repeat-containing protein 3

    See identical proteins and their annotated locations for XP_540261.2

    UniProtKB/TrEMBL
    A0A8C0SI43, A0A8P0SET5
    Conserved Domains (5) summary
    COG2319
    Location:85 → 698
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:407 → 703
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:804 → 905
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:462 → 494
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:47 → 230
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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