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KERA keratocan [ Canis lupus familiaris (dog) ]

Gene ID: 482598, updated on 17-Aug-2024

Summary

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Official Symbol
KERAprovided by VGNC
Official Full Name
keratocanprovided by VGNC
Primary source
VGNC:VGNC:42334
See related
Ensembl:ENSCAFG00845019646
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See KERA in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (32406626..32414412, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (32205471..32213266, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (32056262..32064052, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (31699512..31707323, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (31763195..31770989, complement)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene coiled-coil glutamate rich protein 1 Neighboring gene epiphycan Neighboring gene lumican Neighboring gene decorin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
keratocan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    32406626..32414412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038687268.1 → XP_038543196.1  keratocan

    UniProtKB/TrEMBL
    A0A8C0LAV0, A0A8C0NKP4, A0A8C0NWN8, A0A8I3PHJ7
    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038687267.1 → XP_038543195.1  keratocan

    UniProtKB/TrEMBL
    A0A8C0LAV0, A0A8C0NKP4, A0A8C0NWN8, A0A8I3PHJ7
    Related
    ENSCAFP00845027142.1, ENSCAFT00845034653.1
    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    31699512..31707323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038496846.1 → XP_038352774.1  keratocan

    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038496845.1 → XP_038352773.1  keratocan

    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    31763195..31770989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621511.1 → XP_038477439.1  keratocan

    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038621510.1 → XP_038477438.1  keratocan

    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    32056262..32064052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557607.1 → XP_038413535.1  keratocan

    UniProtKB/TrEMBL
    A0A8C0LAV0, A0A8C0NKP4, A0A8C0NWN8, A0A8I3PHJ7
    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038557606.1 → XP_038413534.1  keratocan

    UniProtKB/TrEMBL
    A0A8C0LAV0, A0A8C0NKP4, A0A8C0NWN8, A0A8I3PHJ7
    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32205471..32213266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847392.5 → XP_852485.1  keratocan

    See identical proteins and their annotated locations for XP_852485.1

    UniProtKB/TrEMBL
    A0A8C0LAV0, A0A8C0NKP4, A0A8C0NWN8, A0A8I3PHJ7
    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_005629220.4 → XP_005629277.1  keratocan

    See identical proteins and their annotated locations for XP_005629277.1

    UniProtKB/TrEMBL
    A0A8C0LAV0, A0A8C0NKP4, A0A8C0NWN8, A0A8I3PHJ7
    Conserved Domains (2) summary
    PRK15370
    Location:48 → 309
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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