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TMTC2 transmembrane O-mannosyltransferase targeting cadherins 2 [ Canis lupus familiaris (dog) ]

Gene ID: 482584, updated on 17-Aug-2024

Summary

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Official Symbol
TMTC2provided by VGNC
Official Full Name
transmembrane O-mannosyltransferase targeting cadherins 2provided by VGNC
Primary source
VGNC:VGNC:47639
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See TMTC2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (25377180..25529388)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (25060632..25448131)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (24585728..24973537)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119869291 Neighboring gene protein O-mannosyl-transferase TMTC2 Neighboring gene U12 minor spliceosomal RNA Neighboring gene uncharacterized LOC111099026 Neighboring gene uncharacterized LOC119869287 Neighboring gene uncharacterized LOC111098890

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2
Names
transmembrane and tetratricopeptide repeat containing 2
XP_022283845.2
XP_038307613.1
XP_038352102.1
XP_038352103.1
XP_038352104.1
XP_038544727.1
XP_539701.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    25377180..25529388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038688799.1 → XP_038544727.1  protein O-mannosyl-transferase TMTC2 isoform X1

    Conserved Domains (2) summary
    COG0457
    Location:56 → 253
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:131 → 157
    TPR; TPR repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    24585728..24973537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038496175.1 → XP_038352103.1  protein O-mannosyl-transferase TMTC2 isoform X3

    Conserved Domains (3) summary
    COG0457
    Location:481 → 722
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:527 → 555
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:248 → 317
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_038496174.1 → XP_038352102.1  protein O-mannosyl-transferase TMTC2 isoform X2

    Conserved Domains (4) summary
    COG0457
    Location:481 → 722
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:643 → 823
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:527 → 555
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:248 → 317
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_038496176.1 → XP_038352104.1  protein O-mannosyl-transferase TMTC2 isoform X4

    Conserved Domains (4) summary
    COG0457
    Location:236 → 467
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:398 → 578
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:282 → 310
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:3 → 72
    DUF1736; Domain of unknown function (DUF1736)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25060632..25448131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022428137.2 → XP_022283845.2  protein O-mannosyl-transferase TMTC2 isoform X6

    UniProtKB/TrEMBL
    A0A8C0P6K7, A0A8C0SJB6, A0A8P0N8N3
    Conserved Domains (3) summary
    COG0457
    Location:481 → 722
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:527 → 555
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:248 → 317
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_539701.7 → XP_539701.4  protein O-mannosyl-transferase TMTC2 isoform X5

    UniProtKB/TrEMBL
    A0A8C0NX25, A0A8C0SHC6, A0A8I3RYI9
    Conserved Domains (4) summary
    COG0457
    Location:481 → 722
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:643 → 823
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:527 → 555
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:248 → 317
    DUF1736; Domain of unknown function (DUF1736)

  3. XM_038451685.1 → XP_038307613.1  protein O-mannosyl-transferase TMTC2 isoform X7

    Conserved Domains (4) summary
    COG0457
    Location:236 → 467
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5010
    Location:398 → 578
    TadD; Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]
    sd00006
    Location:282 → 310
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:3 → 72
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
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