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HOXA5 homeobox A5 [ Canis lupus familiaris (dog) ]

Gene ID: 482370, updated on 17-Aug-2024

Summary

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Official Symbol
HOXA5provided by VGNC
Official Full Name
homeobox A5provided by VGNC
Primary source
VGNC:VGNC:54769
See related
Ensembl:ENSCAFG00845011359
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See HOXA5 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (40253687..40258302, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (39746469..39750543, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (40411943..40416018, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (40368242..40372352, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (40053309..40057416, complement)

Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene homeobox A3 Neighboring gene uncharacterized LOC119866382 Neighboring gene homeobox A4 Neighboring gene uncharacterized LOC119866379 Neighboring gene homeobox A6 Neighboring gene homeobox A7 Neighboring gene homeobox A9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051818.1 Reference ROS_Cfam_1.0

    Range
    40253687..40258302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038686784.1 → XP_038542712.1  homeobox protein Hox-A5

    UniProtKB/TrEMBL
    A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
    Related
    ENSCAFP00845015776.1, ENSCAFT00845020126.1
    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049274.1 Alternate UMICH_Zoey_3.1

    Range
    40368242..40372352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038494894.1 → XP_038350822.1  homeobox protein Hox-A5

    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

  2. XM_038494893.1 → XP_038350821.1  homeobox protein Hox-A5

    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

    Range
    40053309..40057416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621108.1 → XP_038477036.1  homeobox protein Hox-A5

    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

  2. XM_038621107.1 → XP_038477035.1  homeobox protein Hox-A5

    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

    Range
    40411943..40416018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557169.1 → XP_038413097.1  homeobox protein Hox-A5

    UniProtKB/TrEMBL
    A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

  2. XM_038557168.1 → XP_038413096.1  homeobox protein Hox-A5

    UniProtKB/TrEMBL
    A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39746469..39750543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438147.1 → XP_038294075.1  homeobox protein Hox-A5

    UniProtKB/TrEMBL
    A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain

  2. XM_539487.7 → XP_539487.3  homeobox protein Hox-A5

    See identical proteins and their annotated locations for XP_539487.3

    UniProtKB/TrEMBL
    A0A8C0JR06, A0A8C0MH05, A0A8I3N8Z2
    Conserved Domains (1) summary
    pfam00046
    Location:310 → 363
    Homeobox; Homeobox domain
Nucleotide Protein
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