U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCFD2 sec1 family domain containing 2 [ Canis lupus familiaris (dog) ]

Gene ID: 482149, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SCFD2provided by VGNC
Official Full Name
sec1 family domain containing 2provided by VGNC
Primary source
VGNC:VGNC:45904
See related
Ensembl:ENSCAFG00845011397
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SCFD2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (46198021..46612135, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (45541179..45959715, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (46276821..46690640, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (45866687..46285626, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (45400724..45817688, complement)

Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102155122 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene RAS like family 11 member B Neighboring gene uncharacterized LOC111098615 Neighboring gene uncharacterized LOC111098616 Neighboring gene factor interacting with PAPOLA and CPSF1 Neighboring gene ligand of numb-protein X 1 Neighboring gene uncharacterized LOC119864431

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A novel locus on canine chromosome 13 is associated with cataract in the Australian Shepherd breed of domestic dog. Ricketts SL, et al. Mamm Genome, 2015 Jun. PMID 25894238
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sec1 family domain-containing protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051817.1 Reference ROS_Cfam_1.0

    Range
    46198021..46612135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038685624.1 → XP_038541552.1  sec1 family domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JNC8, A0A8C0SNG6, A0A8I3NJI6, A0A8P0P2R6
    Related
    ENSCAFP00845015891.1, ENSCAFT00845020274.1
    Conserved Domains (1) summary
    cl15415
    Location:376 → 664
    Sec1; Sec1 family

  2. XM_038685625.1 → XP_038541553.1  sec1 family domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3NIL7, A0A8P0THK1

  3. XM_038685626.1 → XP_038541554.1  sec1 family domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NGU1, A0A8I3NIV9, A0A8P0SYT7
    Related
    ENSCAFP00845015945.1, ENSCAFT00845020342.1

RNA

  1. XR_005436747.1 RNA Sequence

  2. XR_005436749.1 RNA Sequence

  3. XR_005436748.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049273.1 Alternate UMICH_Zoey_3.1

    Range
    45866687..46285626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038493762.1 → XP_038349690.1  sec1 family domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    cl15415
    Location:376 → 664
    Sec1; Sec1 family

  2. XM_038493763.1 → XP_038349691.1  sec1 family domain-containing protein 2 isoform X2

  3. XM_038493764.1 → XP_038349692.1  sec1 family domain-containing protein 2 isoform X3

RNA

  1. XR_005335235.1 RNA Sequence

  2. XR_005335237.1 RNA Sequence

  3. XR_005335236.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

    Range
    45400724..45817688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038620016.1 → XP_038475944.1  sec1 family domain-containing protein 2 isoform X1

    Conserved Domains (1) summary
    cl15415
    Location:376 → 664
    Sec1; Sec1 family

  2. XM_038620017.1 → XP_038475945.1  sec1 family domain-containing protein 2 isoform X2

  3. XM_038620018.1 → XP_038475946.1  sec1 family domain-containing protein 2 isoform X3

RNA

  1. XR_005403298.1 RNA Sequence

  2. XR_005403300.1 RNA Sequence

  3. XR_005403299.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

    Range
    46276821..46690640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038556084.1 → XP_038412012.1  sec1 family domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JNC8, A0A8C0SNG6, A0A8I3NJI6, A0A8P0P2R6
    Conserved Domains (1) summary
    cl15415
    Location:376 → 664
    Sec1; Sec1 family

  2. XM_038556085.1 → XP_038412013.1  sec1 family domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3NIL7, A0A8P0THK1

  3. XM_038556086.1 → XP_038412014.1  sec1 family domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0JKN0, A0A8C0NGU1

RNA

  1. XR_005369014.1 RNA Sequence

  2. XR_005369016.1 RNA Sequence

  3. XR_005369015.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    45541179..45959715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_844602.5 → XP_849695.1  sec1 family domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JNC8, A0A8C0SNG6, A0A8I3NJI6, A0A8P0P2R6
    Conserved Domains (1) summary
    cl15415
    Location:376 → 664
    Sec1; Sec1 family

  2. XM_038690067.1 → XP_038545995.1  sec1 family domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3NIL7, A0A8P0THK1

  3. XM_022426987.2 → XP_022282695.1  sec1 family domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NGU1, A0A8I3NIV9, A0A8P0SYT7

RNA

  1. XR_005439327.1 RNA Sequence

  2. XR_002632668.2 RNA Sequence

  3. XR_002632667.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials