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FOXP4 forkhead box P4 [ Canis lupus familiaris (dog) ]

Gene ID: 481793, updated on 17-Aug-2024

Summary

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Official Symbol
FOXP4provided by VGNC
Official Full Name
forkhead box P4provided by VGNC
Primary source
VGNC:VGNC:40968
See related
Ensembl:ENSCAFG00845015420
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See FOXP4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
19
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (10719170..10772709)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (10269034..10322552)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (10427587..10481623)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (10250401..10304021)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (10352401..10387661)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106559582 Neighboring gene uncharacterized LOC111098256 Neighboring gene uncharacterized LOC119874161 Neighboring gene MyoD family inhibitor Neighboring gene transcription factor EB

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein P4; LOW QUALITY PROTEIN: forkhead box protein P4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    10719170..10772709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038683472.1 → XP_038539400.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  2. XM_038683476.1 → XP_038539404.1  forkhead box protein P4 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QXB3
    Conserved Domains (2) summary
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:461 → 547
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  3. XM_038683474.1 → XP_038539402.1  forkhead box protein P4 isoform X2

    Conserved Domains (3) summary
    COG5025
    Location:369 → 565
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:308 → 375
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:472 → 558
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  4. XM_038683477.1 → XP_038539405.1  forkhead box protein P4 isoform X4

    Conserved Domains (2) summary
    pfam16159
    Location:308 → 375
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:460 → 546
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  5. XM_038683475.1 → XP_038539403.1  forkhead box protein P4 isoform X8

    UniProtKB/TrEMBL
    A0A8C0MKR4, A0A8I3NLA6
    Related
    ENSCAFP00845021666.1, ENSCAFT00845027537.1
    Conserved Domains (3) summary
    COG5025
    Location:365 → 561
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:468 → 554
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  6. XM_038683478.1 → XP_038539406.1  forkhead box protein P4 isoform X5

    Related
    ENSCAFP00845021679.1, ENSCAFT00845027554.1
    Conserved Domains (2) summary
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:456 → 542
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  7. XM_038683479.1 → XP_038539407.1  forkhead box protein P4 isoform X6

    Conserved Domains (2) summary
    pfam16159
    Location:303 → 370
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:455 → 541
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  8. XM_038683473.1 → XP_038539401.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  9. XM_038683480.1 → XP_038539408.1  forkhead box protein P4 isoform X7

    Conserved Domains (3) summary
    COG5025
    Location:315 → 511
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:254 → 321
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:418 → 504
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    10250401..10304021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038491785.1 → XP_038347713.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  2. XM_038491789.1 → XP_038347717.1  forkhead box protein P4 isoform X3

    Conserved Domains (2) summary
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:461 → 547
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  3. XM_038491787.1 → XP_038347715.1  forkhead box protein P4 isoform X2

    Conserved Domains (3) summary
    COG5025
    Location:369 → 565
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:308 → 375
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:472 → 558
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  4. XM_038491788.1 → XP_038347716.1  forkhead box protein P4 isoform X8

    Conserved Domains (3) summary
    COG5025
    Location:365 → 561
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:468 → 554
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  5. XM_038491790.1 → XP_038347718.1  forkhead box protein P4 isoform X5

    Conserved Domains (2) summary
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:456 → 542
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  6. XM_038491791.1 → XP_038347719.1  forkhead box protein P4 isoform X6

    Conserved Domains (2) summary
    pfam16159
    Location:303 → 370
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:455 → 541
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  7. XM_038491786.1 → XP_038347714.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  8. XM_038491792.1 → XP_038347720.1  forkhead box protein P4 isoform X7

    Conserved Domains (3) summary
    COG5025
    Location:315 → 511
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:254 → 321
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:418 → 504
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    10352401..10387661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038617879.1 → XP_038473807.1  LOW QUALITY PROTEIN: forkhead box protein P4 isoform X8

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    10427587..10481623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038554010.1 → XP_038409938.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  2. XM_038554015.1 → XP_038409943.1  forkhead box protein P4 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QXB3
    Conserved Domains (2) summary
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:461 → 547
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  3. XM_038554012.1 → XP_038409940.1  forkhead box protein P4 isoform X2

    Conserved Domains (3) summary
    COG5025
    Location:369 → 565
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:308 → 375
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:472 → 558
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  4. XM_038554016.1 → XP_038409944.1  forkhead box protein P4 isoform X4

    Conserved Domains (2) summary
    pfam16159
    Location:308 → 375
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:460 → 546
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  5. XM_038554013.1 → XP_038409941.1  forkhead box protein P4 isoform X8

    UniProtKB/TrEMBL
    A0A8C0MKR4, A0A8I3NLA6
    Conserved Domains (3) summary
    COG5025
    Location:365 → 561
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:468 → 554
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  6. XM_038554017.1 → XP_038409945.1  forkhead box protein P4 isoform X5

    Conserved Domains (2) summary
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:456 → 542
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  7. XM_038554018.1 → XP_038409946.1  forkhead box protein P4 isoform X6

    Conserved Domains (2) summary
    pfam16159
    Location:303 → 370
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:455 → 541
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  8. XM_038554011.1 → XP_038409939.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  9. XM_038554019.1 → XP_038409947.1  forkhead box protein P4 isoform X7

    Conserved Domains (3) summary
    COG5025
    Location:315 → 511
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:254 → 321
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:418 → 504
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    10269034..10322552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005627316.4 → XP_005627373.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  2. XM_005627318.4 → XP_005627375.1  forkhead box protein P4 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QXB3
    Conserved Domains (2) summary
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:461 → 547
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  3. XM_005627317.4 → XP_005627374.1  forkhead box protein P4 isoform X2

    Conserved Domains (3) summary
    COG5025
    Location:369 → 565
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:308 → 375
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:472 → 558
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  4. XM_538914.8 → XP_538914.4  forkhead box protein P4 isoform X8

    UniProtKB/TrEMBL
    A0A8C0MKR4, A0A8I3NLA6
    Conserved Domains (3) summary
    COG5025
    Location:365 → 561
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:468 → 554
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  5. XM_005627319.4 → XP_005627376.1  forkhead box protein P4 isoform X5

    UniProtKB/TrEMBL
    F1PC35
    Conserved Domains (2) summary
    pfam16159
    Location:304 → 371
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:456 → 542
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  6. XM_005627320.4 → XP_005627377.1  forkhead box protein P4 isoform X6

    Conserved Domains (2) summary
    pfam16159
    Location:303 → 370
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:455 → 541
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  7. XM_022426031.1 → XP_022281739.1  forkhead box protein P4 isoform X1

    Conserved Domains (3) summary
    COG5025
    Location:370 → 566
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:309 → 376
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:473 → 559
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins

  8. XM_005627321.4 → XP_005627378.1  forkhead box protein P4 isoform X7

    Conserved Domains (3) summary
    COG5025
    Location:315 → 511
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16159
    Location:254 → 321
    FOXP-CC; FOXP coiled-coil domain
    cd20067
    Location:418 → 504
    FH_FOXP4; Forkhead (FH) domain found in Forkhead box protein P4 (FOXP4) and similar proteins
Nucleotide Protein
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