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SNX30 sorting nexin family member 30 [ Canis lupus familiaris (dog) ]

Gene ID: 481672, updated on 17-Aug-2024

Summary

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Official Symbol
SNX30provided by VGNC
Official Full Name
sorting nexin family member 30provided by VGNC
Primary source
VGNC:VGNC:46637
See related
Ensembl:ENSCAFG00845006832
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SNX30 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (68312076..68420280)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (65593004..65700845)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (67596127..67704210)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (66828471..66936337)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (66851734..66959739)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P1-like Neighboring gene INTS3 and NABP interacting protein Neighboring gene solute carrier family 46 member 2 Neighboring gene uncharacterized LOC102155255

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    68312076..68420280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682459.1 → XP_038538387.1  sorting nexin-30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LET3, A0A8C0SUE3, A0A8I3N129, A0A8I3N2C5, A0A8P0PG99
    Related
    ENSCAFP00845009507.1, ENSCAFT00845012166.1
    Conserved Domains (2) summary
    cd06860
    Location:91 → 206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190 → 429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

  2. XM_038682460.1 → XP_038538388.1  sorting nexin-30 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SUE3, A0A8I3N2C5
    Conserved Domains (2) summary
    cd06860
    Location:48 → 163
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:147 → 386
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    66828471..66936337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490987.1 → XP_038346915.1  sorting nexin-30 isoform X1

    Conserved Domains (2) summary
    cd06860
    Location:91 → 206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190 → 429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    66851734..66959739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038617002.1 → XP_038472930.1  sorting nexin-30 isoform X3

    Conserved Domains (2) summary
    cd06860
    Location:72 → 187
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:171 → 410
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    67596127..67704210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038553126.1 → XP_038409054.1  sorting nexin-30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LET3, A0A8C0SUE3, A0A8I3N129, A0A8I3N2C5, A0A8P0PG99
    Conserved Domains (2) summary
    cd06860
    Location:91 → 206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190 → 429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    65593004..65700845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038657379.1 → XP_038513307.1  sorting nexin-30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LET3, A0A8C0SUE3, A0A8I3N129, A0A8I3N2C5, A0A8P0PG99
    Conserved Domains (2) summary
    cd06860
    Location:91 → 206
    PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
    cd07667
    Location:190 → 429
    BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30
Nucleotide Protein
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