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STX17 syntaxin 17 [ Canis lupus familiaris (dog) ]

Gene ID: 481630, updated on 5-Mar-2024

Summary

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Official Symbol
STX17provided by VGNC
Official Full Name
syntaxin 17provided by VGNC
Primary source
VGNC:VGNC:46951
See related
Ensembl:ENSCAFG00845007978
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See STX17 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (57994856..58066658)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (55317343..55389186)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (57223368..57295171)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (56499047..56570883)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (56523978..56595735)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102153773 Neighboring gene nuclear receptor subfamily 4 group A member 3 Neighboring gene endoplasmic reticulum protein 44 Neighboring gene inversin Neighboring gene testis expressed 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    57994856..58066658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682275.1 → XP_038538203.1  syntaxin-17 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
    Related
    ENSCAFP00845010879.1, ENSCAFT00845014037.1
    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  2. XM_038682276.1 → XP_038538204.1  syntaxin-17 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
    Related
    ENSCAFP00845010956.1, ENSCAFT00845014136.1
    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  3. XM_038682277.1 → XP_038538205.1  syntaxin-17 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7D7, A0A8I3N9N6
    Conserved Domains (2) summary
    COG5074
    Location:76 → 202
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:133 → 194
    SNARE_syntaxin17; SNARE motif of syntaxin 17

RNA

  1. XR_005434882.1 RNA Sequence

  2. XR_005434881.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    56499047..56570883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490816.1 → XP_038346744.1  syntaxin-17 isoform X1

    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  2. XM_038490817.1 → XP_038346745.1  syntaxin-17 isoform X1

    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  3. XM_038490818.1 → XP_038346746.1  syntaxin-17 isoform X2

    Conserved Domains (2) summary
    COG5074
    Location:76 → 202
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:133 → 194
    SNARE_syntaxin17; SNARE motif of syntaxin 17

RNA

  1. XR_005333434.1 RNA Sequence

  2. XR_005333433.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    56523978..56595735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616815.1 → XP_038472743.1  syntaxin-17 isoform X1

    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  2. XM_038616816.1 → XP_038472744.1  syntaxin-17 isoform X1

    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  3. XM_038616817.1 → XP_038472745.1  syntaxin-17 isoform X2

    Conserved Domains (2) summary
    COG5074
    Location:76 → 202
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:133 → 194
    SNARE_syntaxin17; SNARE motif of syntaxin 17

RNA

  1. XR_005401509.1 RNA Sequence

  2. XR_005401508.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    57223368..57295171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552937.1 → XP_038408865.1  syntaxin-17 isoform X1

    UniProtKB/TrEMBL
    A0A8C0Z2U0, A0A8I3N7E3

  2. XM_038552938.1 → XP_038408866.1  syntaxin-17 isoform X1

    UniProtKB/TrEMBL
    A0A8C0Z2U0, A0A8I3N7E3

  3. XM_038552939.1 → XP_038408867.1  syntaxin-17 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7D7, A0A8I3N9N6

RNA

  1. XR_005367055.1 RNA Sequence

  2. XR_005367054.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    55317343..55389186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_538752.7 → XP_538752.2  syntaxin-17 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  2. XM_038667540.1 → XP_038523468.1  syntaxin-17 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
    Conserved Domains (2) summary
    COG5074
    Location:105 → 231
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:162 → 223
    SNARE_syntaxin17; SNARE motif of syntaxin 17

  3. XM_038667541.1 → XP_038523469.1  syntaxin-17 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T7D7, A0A8I3N9N6
    Conserved Domains (2) summary
    COG5074
    Location:76 → 202
    COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
    cd15846
    Location:133 → 194
    SNARE_syntaxin17; SNARE motif of syntaxin 17

RNA

  1. XR_005427910.1 RNA Sequence

  2. XR_002631625.2 RNA Sequence

Nucleotide Protein
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