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VCP valosin containing protein [ Canis lupus familiaris (dog) ]

Gene ID: 481590, updated on 17-Aug-2024

Summary

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Official Symbol
VCPprovided by VGNC
Official Full Name
valosin containing proteinprovided by VGNC
Primary source
VGNC:VGNC:48243
See related
Ensembl:ENSCAFG00845005647
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See VCP in Genome Data Viewer
Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (52702444..52717215, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (50205792..50220556, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (51933494..51948301, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (51246536..51261297, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (51231677..51246443, complement)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B5 Neighboring gene SPATA31 subfamily G member 1 Neighboring gene FA complementation group G Neighboring gene phosphatidylinositol glycan anchor biosynthesis class O

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic spindle disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde protein transport, ER to cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of VCP-NPL4-UFD1 AAA ATPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transitional endoplasmic reticulum ATPase
XP_038346507.1
XP_038408625.1
XP_038472489.1
XP_038537953.1
XP_852626.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    52702444..52717215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682025.1 → XP_038537953.1  transitional endoplasmic reticulum ATPase

    UniProtKB/TrEMBL
    A0A8C0KSM9, A0A8C0NHS9, A0A8I3N153
    Related
    ENSCAFP00845007818.1, ENSCAFT00845010017.1
    Conserved Domains (1) summary
    TIGR01243
    Location:25 → 764
    CDC48; AAA family ATPase, CDC48 subfamily

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    51246536..51261297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490579.1 → XP_038346507.1  transitional endoplasmic reticulum ATPase

    Conserved Domains (1) summary
    TIGR01243
    Location:25 → 764
    CDC48; AAA family ATPase, CDC48 subfamily

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    51231677..51246443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616561.1 → XP_038472489.1  transitional endoplasmic reticulum ATPase

    Conserved Domains (1) summary
    TIGR01243
    Location:25 → 764
    CDC48; AAA family ATPase, CDC48 subfamily

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    51933494..51948301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552697.1 → XP_038408625.1  transitional endoplasmic reticulum ATPase

    UniProtKB/TrEMBL
    A0A8C0KSM9, A0A8C0NHS9, A0A8I3N153
    Conserved Domains (1) summary
    TIGR01243
    Location:25 → 764
    CDC48; AAA family ATPase, CDC48 subfamily

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    50205792..50220556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847533.6 → XP_852626.1  transitional endoplasmic reticulum ATPase

    See identical proteins and their annotated locations for XP_852626.1

    UniProtKB/TrEMBL
    A0A8C0KSM9, A0A8C0NHS9, A0A8I3N153
    Conserved Domains (1) summary
    TIGR01243
    Location:25 → 764
    CDC48; AAA family ATPase, CDC48 subfamily
Nucleotide Protein
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